diff --git a/.github/workflows/check-standard.yaml b/.github/workflows/check-standard.yaml new file mode 100644 index 0000000..55fab37 --- /dev/null +++ b/.github/workflows/check-standard.yaml @@ -0,0 +1,51 @@ +# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples +# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help +on: + push: + branches: [main, master] + pull_request: + branches: [main, master] + +name: R-CMD-check + +jobs: + R-CMD-check: + runs-on: ${{ matrix.config.os }} + + name: ${{ matrix.config.os }} (${{ matrix.config.r }}) + + strategy: + fail-fast: false + matrix: + config: + - {os: macos-latest, r: 'release'} + - {os: windows-latest, r: 'release'} + - {os: ubuntu-latest, r: 'release'} + + env: + GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + R_KEEP_PKG_SOURCE: yes + R_REMOTES_NO_ERRORS_FROM_WARNINGS: true + _R_CHECK_CRAN_INCOMING_REMOTE_: false + _R_CHECK_FORCE_SUGGESTS_: false + + steps: + - uses: actions/checkout@v3 + + - uses: r-lib/actions/setup-pandoc@v2 + + - uses: r-lib/actions/setup-r@v2 + with: + r-version: ${{ matrix.config.r }} + http-user-agent: ${{ matrix.config.http-user-agent }} + use-public-rspm: true + + - uses: r-lib/actions/setup-r-dependencies@v2 + with: + extra-packages: any::rcmdcheck + needs: check + + - uses: r-lib/actions/check-r-package@v2 + with: + upload-snapshots: true + diff --git a/tests/testthat/test-main.R b/tests/testthat/test-main.R index 0c8302c..556eb4a 100644 --- a/tests/testthat/test-main.R +++ b/tests/testthat/test-main.R @@ -1,13 +1,9 @@ +library(SEraster) library(SpatialExperiment) library(Matrix) library(sf) -setwd("~/Desktop/SEraster") -devtools::load_all() - - data("merfish_mousePOA") - resolution <- 100 data <- assay(merfish_mousePOA) @@ -106,4 +102,3 @@ test_that("Correct structure of plotRaster output (ggplot)", { expect_s3_class(out_plotRaster, "ggplot") }) -devtools::test()