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James_Holmquist_CV.html
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<center>
James R Holmquist<br />
Smithsonian Environmental Research Center<br />
647 Contees Wharf Rd<br />
Edgewater, MD 21037<br />
<a href="mailto:[email protected]">[email protected]</a> | Desk: (443) 482-2267
</center>
<p><br/></p>
<div id="education" class="section level2">
<h2>Education</h2>
<p><strong>Ph.D. Biology</strong>, University of California, Los Angeles (UCLA), 2013<br />
Advisor: Glen M MacDonald<br />
Department: Ecology and Evolutionary Biology (EEB)</p>
<p><strong>B.S. Biology</strong>, Loyola Marymount University (LMU), Los Angeles, 2008</p>
</div>
<div id="employment" class="section level2">
<h2>Employment</h2>
<p><strong>Smithsonian Environmental Research Center (SERC)</strong><br />
<em>Ecologist</em>: January 2018-Present<br />
<em>Postdoctoral Research Fellow</em>: March 2015-January 2018</p>
<p><strong>UCLA Institute of the Environment and Sustainability (IoES)</strong>: <em>Postdoctoral Scholar</em>: September 2013–May 2015</p>
<p><strong>UCLA EEB</strong>: <em>Graduate Student Researcher and Teaching Assistant</em>: July 2008–September 2013</p>
<p><strong>LMU Biology Department</strong>: <em>Undergraduate Researcher and Teaching Assistant</em>: May 2005–June 2008</p>
</div>
<div id="peer-reviewed-publications" class="section level2">
<h2>Peer Reviewed Publications</h2>
<p><strong>[19 articles in print, 1 in revision, 5 in preparation]</strong></p>
<p><strong>Holmquist, J.R.</strong> Windham-Myers, L., Bernal, B., Byrd, K.B., Crooks, S., Gonneea, M.E., Herold, N., Knox, S.H., Kroeger, K., McCombs, J., Megonigal, J.P., Meng, L., Morris, J.T., Sutton-Grier, A.E., Troxler, T.G., Weller, D. (2018). Uncertainty in U.S. Coastal Wetland National Greenhouse Gas Inventorying. Environmental Research Letters. <a href="https://doi.org/10.1088/1748-9326/aae157" class="uri">https://doi.org/10.1088/1748-9326/aae157</a>.</p>
<p>Gallego-Sala, A., Charman, D. et al., <strong>including Holmquist, J.R.</strong> (2018). Latitudinal limits to the predicted increase of the peatland carbon sink with warming. Nature Climate Change.</p>
<p><strong>Holmquist, J. R.</strong>, Windham-Myers, L., Bliss, N., Crooks, S., Morris, J. T., Megonigal, J. P., … & Ferner, M. C. (2018). Accuracy and Precision of Tidal Wetland Soil Carbon Mapping in the Conterminous United States. Scientific Reports, 8(1), 9478. <a href="https://doi.org/10.1038/s41598-018-26948-7" class="uri">https://doi.org/10.1038/s41598-018-26948-7</a></p>
<p>Byrd, K. B., Ballanti, L., Thomas, N., Nguyen, D., <strong>Holmquist, J. R.</strong>, Simard, M., & Windham-Myers, L. (2018). A remote sensing-based model of tidal marsh aboveground carbon stocks for the conterminous United States. ISPRS Journal of Photogrammetry and Remote Sensing, 139, 255-271.</p>
<p>Najjar, R. G., Herrmann, M., Alexander, et al including <strong>Holmquist J.R.</strong> (2018). Carbon budget of tidal wetlands, estuaries, and shelf waters of Eastern North America. Global Biogeochemical Cycles, 32(3), 389-416.</p>
<p>Rosencranz, J. A., Brown, L. N., <strong>Holmquist, J. R.</strong>, Sanchez, Y., MacDonald, G. M., & Ambrose, R. F. (2017). The Role of Sediment Dynamics for Inorganic Accretion Patterns in Southern California’s Mediterranean-Climate Salt Marshes.Estuaries and Coasts,40(5), 1371-1384.</p>
<p>Loisel, J., van Bellen, S., Pelletier, L., Talbot, J., Hugelius, G., Karran, D., … & <strong>Holmquist, J.</strong> (2017). Insights and issues with estimating northern peatland carbon stocks and fluxes since the Last Glacial Maximum.Earth-science reviews,165, 59-80.</p>
<p>MacDonald, G. M., Moser, K. A., Bloom, A. M., Potito, A. P., Porinchu, D. F., <strong>Holmquist, J. R.</strong>, … & Kremenetski, K. V. (2016). Prolonged California aridity linked to climate warming and Pacific sea surface temperature. Scientific Reports, 6, 33325.</p>
<p><strong>Holmquist, J. R.</strong>, Booth, R. K., & MacDonald, G. M. (2016). Boreal peatland water table depth and carbon accumulation during the Holocene thermal maximum, Roman Warm Period, and Medieval Climate Anomaly. Palaeogeography, Palaeoclimatology, Palaeoecology, 444, 15-27.</p>
<p><strong>Holmquist, J. R.</strong>, Finkelstein, S. A., Garneau, M., Massa, C., Yu, Z., & MacDonald, G. M. (2016). A comparison of radiocarbon ages derived from bulk peat and selected plant macrofossils in basal peat cores from circum-arctic peatlands. Quaternary Geochronology, 31, 53-61.</p>
<p>Philben, M., <strong>Holmquist, J.</strong>, MacDonald, G., Duan, D., Kaiser, K., & Benner, R. (2015). Temperature, oxygen, and vegetation controls on decomposition in a James Bay peatland. Global Biogeochemical Cycles, 29(6), 729-743.</p>
<p>Willis, K. S., Beilman, D., Booth, R. K., Amesbury, M., <strong>Holmquist, J.</strong>, & MacDonald, G. (2015). Peatland paleohydrology in the southern West Siberian Lowlands: Comparison of multiple testate amoeba transfer functions, sites, and Sphagnum δ13C values. The Holocene, 25(9), 1425-1436.</p>
<p><strong>Holmquist, J. R.</strong>, Reynolds, L., Brown, L. N., Southon, J. R., Simms, A. R., & MacDonald, G. M. (2015). Marine radiocarbon reservoir values in southern California estuaries: interspecies, latitudinal, and interannual variability. Radiocarbon, 57(3), 449-458.</p>
<p>Hargan, K. E., Rühland, K. M., Paterson, A. M., Finkelstein, S. A., <strong>Holmquist, J. R.</strong>, MacDonald, G. M., … & Smol, J. P. (2014). The influence of water-table depth and pH on the spatial distribution of diatom species in peatlands of the Boreal Shield and Hudson Plains, Canada.Botany,93(2), 57-74.</p>
<p>Hargan, K. E., Rühland, K. M., Paterson, A. M., <strong>Holmquist, J.</strong>, MacDonald, G. M., Bunbury, J., … & Smol, J. P. (2015). Long-term successional changes in peatlands of the Hudson Bay Lowlands, Canada inferred from the ecological dynamics of multiple proxies. The Holocene, 25(1), 92-107.</p>
<p><strong>Holmquist, J. R.</strong>, & MacDonald, G. M. (2014). Peatland succession and long-term apparent carbon accumulation in central and northern Ontario, Canada. The Holocene, 24(9), 1075-1089.</p>
<p>Loisel, J., Yu, Z., Beilman, D. W., Camill, P., Alm, J., Amesbury, M. J. et al including <strong>J.R. Holmquist</strong> (2014). A database and synthesis of northern peatland soil properties and Holocene carbon and nitrogen accumulation. The Holocene, 24(9), 1028-1042.</p>
<p><strong>Holmquist, J. R.</strong>, MacDonald, G. M., & Gallego-Sala, A. (2014). Peatland initiation, carbon accumulation, and 2 ka depth in the James Bay Lowland and adjacent regions. Arctic, Antarctic, and Alpine research, 46(1), 19-39.</p>
<div id="publications-in-revision" class="section level3">
<h3>Publications in Revision</h3>
<p>Rogers, K., Kelleway, J. et al. including <strong>Holmquist, J.R.</strong> Capacity of coastal wetlands to sequester carbon is related to sea-level rise. Targeted Journal: Nature.</p>
</div>
<div id="publications-in-preparation" class="section level3">
<h3>Publications in Preparation</h3>
<p><strong>In order of planned submission</strong> <br/></p>
<p><strong>Holmquist, J.R.</strong>, Brown, L.N., MacDonald, G.M. Patterns of Coastal Marsh Vulnerability to Relative Sea-Level Rise in the Conterminous U.S. Targeted Journal: Earth’s Futures.</p>
<p><strong>Holmquist, J.R.</strong>, Fargione, J., Kroeger, K., Megonigal, J.P., Weller, D., Windham-Myers, L. Regional Opportunities for Coastal Wetland Greenhouse Gas Emission Reduction in the Contiguous United States. Targeted Journal: Nature Climate Change.</p>
<p><strong>Holmquist, J.R.</strong> et al. The Sensitivity of Tidal Wetland Resiliency Projections to Remotely Sensed Elevation Bias. Targeted Journal: Estuaries and Coasts.</p>
<p><strong>Holmquist, J.R.</strong>, Brazolla, N., Crooks, S., Kroeger, K., Megonigal, J.P., Weller, D., Windham-Myers, L. Using Tide-Series Analysis to Detect Coastal Restoration Events and Opportunities. Targeted Journal: Remote Sensing of the Environment.</p>
<p><strong>Holmquist, J.R.</strong> et al. Vegetation and Elevation Dynamics at the Highly Studied Global Change Research Wetland. Targeted Journal: TBD.</p>
</div>
<div id="datasets-and-research-products" class="section level3">
<h3>Datasets and Research Products</h3>
<p><strong>Holmquist, J. R.</strong> et al. (2018). [Dataset:] Accuracy and Precision of Tidal Wetland Soil Carbon Mapping in the Conterminous United States: Public Soil Carbon Data Release. <a href="https://doi.org/10.25572/ccrcn/10088/35684" class="uri">https://doi.org/10.25572/ccrcn/10088/35684</a>.</p>
<p>Najjar, R., et al including <strong>Holmquist J.R.</strong> (2018). Mean Annual Fluxes of Carbon in Coastal Ecosystems of Eastern North America.ORNL DAAC. <a href="https://doi.org/10.3334/ORNLDAAC/1594" class="uri">https://doi.org/10.3334/ORNLDAAC/1594</a></p>
<p>Byrd, K.B., Ballanti, L.R., Thomas, N.M., Nguyen, D.K., <strong>Holmquist, J.R.</strong> et al. (2017) Biomass/Remote Sensing dataset: 30m resolution tidal marsh biomass samples and remote sensing data for six regions in the conterminous United States: U.S. Geological Survey data release, <a href="https://doi.org/10.5066/F77943K8" class="uri">https://doi.org/10.5066/F77943K8</a>.</p>
</div>
<div id="book-chapters-reports-and-dissertation" class="section level3">
<h3>Book Chapters, Reports, and Dissertation</h3>
<p>Byrd, K., McOwen, C., Weatherdon, L., Crooks, S., and <strong>Holmquist, J.</strong> (2018). [Book Chapter] Status of Tidal Marsh Mapping for Blue Carbon Inventories. A Blue Carbon Primer: The State of Coastal Wetland Carbon Science, Practice, and Policy. Eds. Windham-Meyers, L., Crooks, S., Troxler, T.</p>
<p>Thorne, K.M., MacDonald, G.M. et al. including <strong>Holmquist, J.R.</strong> (2016). [Open File Report] Effects of climate change on tidal marshes along a latitudinal gradient in California (No. 2016-1125). US Geological Survey.</p>
<p><strong>Holmquist, J.R.</strong> (2013). [Ph.D. Dissertation] Holocene Peatland Carbon Accumulation, Ecology, and Hydrology in the Canadian James Bay Lowlands. University of California, Los Angeles.</p>
</div>
</div>
<div id="grants-and-contracts-awarded" class="section level2">
<h2>Grants and Contracts Awarded</h2>
<p><strong>$609,538 total since 2017</strong><br />
<br/> <strong>Mapping Greenhouse Gas Relevant Tidal Elevation Gradients and Management Activities in U.S. Coastal Wetlands</strong> PI: James R Holmquist<br />
Description: Interagency Agreement Between SERC and USGS Landcarbon Program<br />
POC: Zhiliang Zhu (<a href="mailto:[email protected]">[email protected]</a>)<br />
Current Award: $50,000, Pending Award: $20,000<br />
Award Period: August 2018 – September 2020</p>
<p><strong>Mapping Coastal Management Opportunities for Greenhouse Gas Reduction in Climate Alliance States</strong> PI: James R Holmquist<br />
Description: Contract for Services Between SERC and the Nature Conservancy<br />
POC: Joseph Fargione (<a href="mailto:[email protected]">[email protected]</a>)<br />
Current Award: $10,000<br />
Award Period: June 2018 – December 2018</p>
<p><strong>Research Coordination Network (RCN): Building a Collaborative Network for Coastal Wetland Carbon Cycle Synthesis</strong> PI: Dr. Emmett Duffy, Smithsonian Environmental Research Center<br />
Program Name: NSF-DEB-Ecosystems Program<br />
POC: Dr. Katrina Schäfer, 703-292-2762 (<a href="mailto:[email protected]">[email protected]</a>)<br />
Current Award: $499,938<br />
Award Period: 1 March 2017 - 30 April 2021</p>
<p><strong>US GHG Inventory–Impounded Wetlands</strong> PI: J Patrick Megonigal<br />
Description: Subaward from NOAA Grant (NA16NMF4630103) via Silvestrum Climate Associates and Restore America’s Estuaries<br />
POC: Stephen Crooks (<a href="mailto:[email protected]">[email protected]</a>) and Stefanie Simpson (<a href="mailto:[email protected]">[email protected]</a>)<br />
Past Award: $29,600<br />
Award Period: 1 June 2017 - 31 March 2018</p>
</div>
<div id="teaching-experience" class="section level2">
<h2>Teaching Experience</h2>
<p><strong>Coastal Carbon Research Coordination Network (CCRCN) Outreach</strong>: GitHub lessons for Soils Working Group (November 2018), R-Code lessons for Ocean Carbon & Biogeochemistry Lateral Flux Working Group (August 2018), Developed R-Code Lesson using CCRCN Soil Carbon Synthesis (July 2018; <a href="https://serc.si.edu/coastalcarbon/r-coding" class="uri">https://serc.si.edu/coastalcarbon/r-coding</a>).</p>
<p><strong>Data/Software Carpentry Instructor</strong>: Lead 2-Day Workshop at SERC (March 2018), Training Completed (February 2018)</p>
<p><strong>Undergraduate Research Mentor at SERC</strong>: Nicoletta Brazzola (Fall 2017), Jefferson Riera (Summer 2016)</p>
<p><strong>Undergraduate Research Supervisor at UCLA</strong>: Justine Nikeitan (2014-2015), Tongwei Weng (Summer 2014), Breeanna Bergeron-Matsumoto (2014), Alvin Li (2011-2014), Maoqiao Mao (Summer 2013), Sam Geldin (2013), Julianne Lee, Michelle Lim, Loren Quintanar (2011-2012), Scott Guzman, Nikola Kondov, Karly Wagner (2010-2011), Luis Aguilar, Jennifer Kim (2009-2010), Siduo Zhang (Summer 2009)</p>
<p><strong>Private Chemistry and Biology Tutor</strong>: 2012-2013</p>
<p><strong>Teaching Assistant Positions at UCLA</strong>: <em>Introduction to Environmental Science (Fall 2012)</em>, <em>Plant Physiology (Spring 2012, Winter 2010)</em>, Introduction to Life Sciences (Winter 2012, Fall 2010, Spring 2009), Marine Biology (Fall 2010)</p>
<p><strong>Class Reader at UCLA for Global Change Biology</strong>: Fall 2010</p>
<p><strong>Teaching Assistant Positions at LMU</strong>: Coral Reef Ecology Study Abroad in Roatán, Honduras (Summer 2008), Field Botany (Spring 2008), General Ecology (Fall 2007)</p>
<p><em>Indicates more significant contribution to curriculum development.</em></p>
</div>
<div id="awards-scholarships-and-fellowships" class="section level2">
<h2>Awards, Scholarships, and Fellowships</h2>
<p><strong>Northern Research Fund</strong>: C$3,600, to support field research at Churchill Research Center: 2012</p>
<p><strong>University of Utrecht</strong>: €5,000 for 3-month research fellowship: 2011</p>
<p><strong>UCLA EEB</strong>: Departmental Fellowship: Fall 2008, Winter 2009, Summer 2009</p>
<p><strong>LMU</strong><br />
<em>Alan R. Sedoux Prize for Field and Marine Biology</em>: 2008<br />
<em>Howard Towner Memorial Scholarship</em>: 2007-2008<br />
<em>Rev. Alfred J. Kilp Memorial Scholarship</em>: 2004</p>
</div>
<div id="notable-recent-research-presentations" class="section level2">
<h2>Notable Recent Research Presentations</h2>
<p><strong>Holmquist JR</strong>, JP Megonigal (2018). [Town Hall] Updates from the Coastal Carbon Research Coordination Network: Year 1. American Geophysical Union (AGU), D.C.</p>
<p><strong>Holmquist JR</strong>, J Fargione, K Kroeger, JP Megonigal, D Weller, L Windham-Myers (2018). Opportunities for Wetland Greenhouse Gas Emission Reduction from Coastal States in the Contiguous U.S. American Geophysical Union (AGU), D.C.</p>
<p><strong>Holmquist JR</strong> (2018). Uncertainty in United States Greenhouse Gas Inventorying. NASA Carbon Monitoring Systems September Science Team meeting.</p>
<p><strong>Holmquist JR</strong> (2018). Accuracy and Precision of Tidal Wetland Soil Carbon Mapping in the Conterminous United States. NASA Carbon Monitoring Systems July Science Team meeting.</p>
<p><strong>Holmquist JR</strong> (2018). Counting in Muddy Waters. SERC Science and Coffee Lightning Talk Series, Edgewater MD.</p>
<p><strong>Holmquist JR</strong> (2018). How a little bit of math and a lot of data synthesis can show us what our next blue carbon research project needs to be. 5th Annual GCReW Symposium Villanova University, PA.</p>
<p><strong>Holmquist JR</strong>, J Tang, P Megonigal, S Crooks, J Ramos (2017). [Town Hall] Introducing a U.S.-based Research Coordination Network for Coastal Carbon. American Geophysical Union (AGU), New Orleans, LA.</p>
<p><strong>Holmquist JR</strong> et al. (2017). How much swamp are we talking here?: Propagating uncertainty about the area of coastal wetlands into the U.S. greenhouse gas inventory. AGU, New Orleans, LA.</p>
<p><strong>Holmquist JR</strong>, J Riera, et al. (2017). [invited] Applying Coastal Marsh Resiliency Models at the Landscape-Scale Using Bias-Corrected Remotely-Sensed Elevation Data. Coastal & Estuarine Research Federation Annual Meeting, Providence, RI.</p>
<p><strong>Holmquist JR</strong>, J Riera, et al. (2017). Coastal Wetland Soil Carbon Stocks Mapping and the Myth of Fingerprints: ‘I’ve Seen Them All and Man They’re All the Same’. 4th Annual Global Change Research Wetland Symposium, Edgewater, MD.</p>
<p><strong>Holmquist JR</strong> (2016). [invited] A US ‘Blue’ Carbon Monitoring System: Soil Carbon Stocks, Fluxes and Uncertainties. Chesapeake Bay Sentinel Site Coalition Partners Quarterly Call.</p>
<p><strong>Holmquist JR</strong> et al. (2016). [poster] Reducing Uncertainty and Bias in US Coastal Wetland Carbon Stock Estimates. AGU, San Francisco, CA.</p>
<p><strong>Holmquist JR</strong> et al. (2016). [poster] Linking Satellite and Soil Data to Validate Coastal Wetland ‘Blue Carbon’ Inventories: Progress on Accounting for Carbon Stored in US Coastal Wetland Soils. NASA Carbon Monitoring Systems Science Team Meeting. National Center for Atmospheric Research, Boulder, CO.</p>
<p><strong>Holmquist JR</strong>, J Riera et al. (2016). [invited] Limits to ‘Upscaling’ a Marsh Resiliency Model Using Remote Sensing. Coastal Wetland Change Workshop. Florida International University, Miami FL.</p>
<p><strong>Holmquist JR</strong> (2016). [invited] Coastal Wetlands: Vulnerability and Value. Horn Point Lab, University of Maryland Center for Environmental Sciences, Cambridge, MD.</p>
</div>
<div id="recent-relevant-training" class="section level2">
<h2>Recent Relevant Training</h2>
<ul>
<li>Media Training (Philips Media Training, LLC; 2018)</li>
<li>SESYNC Bayesian Hierarchical Modeling Course (2017)</li>
<li>NOAA Water-Levels Training Workshop (2017)</li>
<li>Code Academy: Python, Command Line (2015-2016)</li>
<li>Google Earth Engine User’s-Summit (2016)</li>
</ul>
</div>
<div id="peer-reviewer-assignments" class="section level2">
<h2>Peer Reviewer Assignments</h2>
<ul>
<li>2018 - Journal of the American Water Resources Association</li>
<li>2018 - Science Advances</li>
<li>2017 - Global Biogeochemical Cycles</li>
<li>2017 - Biogeosciences Discussions</li>
<li>2017 - National Institute of Food and Agriculture Small Business Innovation Research Program Forests & Related Resources</li>
<li>2016 - Science of the Total Environment</li>
<li>2016 - Quaternary Research</li>
<li>2016 - Quaternary International</li>
<li>2015 - Climate Research</li>
</ul>
</div>
<div id="press" class="section level2">
<h2>Press</h2>
<ul>
<li>Interviewed for E&E News. U.S. tidal areas could hold 800M tons of carbon — study. 22 June 2018. <a href="https://www.eenews.net/greenwire/2018/06/22/stories/1060086177">Link</a>.</li>
<li>Interviewed for SERC Blog Post and Press Release. 800 Million Tons of Blue Carbon May Lie Buried in U.S. Tidal Wetlands. 21 June 2018. <a href="https://serc.si.edu/media/press-release/800-million-tons-blue-carbon-may-lie-buried-us-tidal-wetlands">Link</a>.</li>
<li>Q&A with Landsat Science. How Much Swamp Are We Talking Here? Towards Better Mapping of Coastal Wetlands. 13 December 2017. <a href="https://landsat.gsfc.nasa.gov/how-much-swamp-are-we-talking-here-towards-better-mapping-of-coastal-wetlands">Link</a>.</li>
</ul>
</div>
<div id="other-science-outreach-and-service" class="section level2">
<h2>Other Science Outreach and Service</h2>
<ul>
<li>‘Roving Expert’ on Coastal Wetland Restoration Opportunities for the U.S. Climate Alliance Learning Lab on Natural and Working Lands – July 2018</li>
<li>Skype a Scientist participant – December 2017</li>
<li>Chesapeake Bay Sentinel Site Coalition Coordinator Hiring Committee Member – November 2017</li>
<li>Volunteer Speaker to 6th Grade Science Class at Fremont Elementary School, Long Beach, CA - 2017</li>
<li>Volunteer Science Fair Judge Our Lady of Refuge Long Beach, CA - 2015, 2014, 2012</li>
</ul>
</div>
<div id="professional-affiliations" class="section level2">
<h2>Professional Affiliations</h2>
<ul>
<li>Coastal Carbon Research Coordination Network Steering Committee</li>
<li>NASA Carbon Monitoring Systems Science Team Member</li>
<li>Chesapeake Bay Sentinel Site Coalition</li>
<li>Carbon in Peat on EArth through Time (C-PEAT) working group</li>
<li>American Geophysical Union</li>
</ul>
</div>
<div id="miscellaneous-skills" class="section level2">
<h2>Miscellaneous Skills</h2>
<ul>
<li>Independent musician and songwriter</li>
<li>PADI Certified Rescue Diver (2007)</li>
</ul>
</div>
</div>
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