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when running sampledata, 'can’t have more folds than instances' #9

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woonh opened this issue May 26, 2020 · 0 comments
Open

when running sampledata, 'can’t have more folds than instances' #9

woonh opened this issue May 26, 2020 · 0 comments

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@woonh
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woonh commented May 26, 2020

Hello :)
First of all, thank you for developing this good pipeline.
I installed CancerDiscover on linux server and now I am trying to run the pipeline with provided SampleData. There are total 10 CEL files provided. (5 are normal, other 5 are tumor).
Then I edited configuration file ( data partitioning : 5 folds)

image

When running masterScript_2.bash, I encountered the following message -

can't have more folds than instances
image

As far as I understand, number of instances are 10 (CEL files), then 5 fold is fine to run.
I also tried 2 fold, but the program produced same error.

Could you kindly help me how I could fix this?

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