Milestone v0.3

[skim0119]

Milestone v0.3

New Features

• Multivariate information theory  #83 @Gauravu2
  • Partial Information Decomposition Lattice (PID)
    • [Timme et al., 2016]
    • [Luppi et al., 2022]
    • Newman et al., 2022
• Spatiotemporal coherence DMD for spatiotemporal coherence #62 @Gauravu2
• Data Encoding/Decoding to Spike (Coding)
  • Temporal
    • (Audio) Lyon's Ear Model @skim0119 Audio encoding (Lyon's Ear Model + BSA) #91
    • (Signal) Bens Spiker Algorithms Encoder @skim0119 Audio encoding (Lyon's Ear Model + BSA) #91
    • (Temporal Contrast) Threshold-based representation (TBR), Step-Forward (SF), Moving Windows (MW) @skim0119
    • (Signal) Hough Spiker Algorithm (HSA/mHSA)
    • (Audio) Spectrogram (scipy)
    • (Signal) LIF coding
  • Spatial
    • Gaussian Receptor Field
    • Bohte GRF
    • First-Spike (TTFS)
    • LIF coding
    • Rate-based encoding
  • Difference
    • Signal to noise ratio (SNR)
    • Root mean square error (RMSE)
    • Coefficient of regression
• "Memory" Quantification
  • Fading Memory
  • Edge-of-Chaos
  • Separation and Generalization
• TTL Digital input signal readout TTL event readout from OpenEphys dataset #99 @skim0119

Additional Functionality

Here is the list of functions we would like to implement using our code. Some could be accomplished by having "how-to" documentation, some might need additional implementations on the modules. Feel free to make a separate issue and propose ideas if you want to take a shot.

• Adaptive filtering
• Abnormally and spike events - Detect the abnormality in the system, given spontaneous data. #68 @jihugo
• Open Sound Control (OSC) plugin

Data Organization

• Initial implementation of MiV HDF5-based data format #90 @iraikov
• Storage for experiment/simulation dataset
• ASDF to SpikeTrains ASDF file conversion to spiketrain #77 @skim0119

Documentation

• Logo
• About page

Test Coverage

Others

• Channel indexing after masking #37
• Semi-online processing for long recording