diff --git a/src/swell/configuration/jedi/interfaces/geos_atmosphere/model/background.yaml b/src/swell/configuration/jedi/interfaces/geos_atmosphere/model/background.yaml old mode 100755 new mode 100644 diff --git a/src/swell/configuration/jedi/interfaces/geos_atmosphere/model/background_ensemble.yaml b/src/swell/configuration/jedi/interfaces/geos_atmosphere/model/background_ensemble.yaml old mode 100755 new mode 100644 diff --git a/src/swell/configuration/jedi/interfaces/geos_atmosphere/model/background_error.yaml b/src/swell/configuration/jedi/interfaces/geos_atmosphere/model/background_error.yaml index 61e13e53..bed426df 100644 --- a/src/swell/configuration/jedi/interfaces/geos_atmosphere/model/background_error.yaml +++ b/src/swell/configuration/jedi/interfaces/geos_atmosphere/model/background_error.yaml @@ -12,6 +12,7 @@ saber outer blocks: - saber block name: gsi interpolation to model grid state variables to inverse: &bvars [eastward_wind,northward_wind,air_temperature,surface_pressure, specific_humidity,cloud_liquid_ice,cloud_liquid_water, + rain_water,snow_water, mole_fraction_of_ozone_in_air, fraction_of_ocean,fraction_of_lake,fraction_of_ice, sfc_geopotential_height_times_grav] diff --git a/src/swell/configuration/jedi/interfaces/geos_atmosphere/model/geometry.yaml b/src/swell/configuration/jedi/interfaces/geos_atmosphere/model/geometry.yaml old mode 100755 new mode 100644 diff --git a/src/swell/configuration/jedi/interfaces/geos_atmosphere/model/geometry_inner.yaml b/src/swell/configuration/jedi/interfaces/geos_atmosphere/model/geometry_inner.yaml old mode 100755 new mode 100644 diff --git a/src/swell/configuration/jedi/interfaces/geos_atmosphere/model/getvalues.yaml b/src/swell/configuration/jedi/interfaces/geos_atmosphere/model/getvalues.yaml old mode 100755 new mode 100644 index dff4cd5d..796e520e --- a/src/swell/configuration/jedi/interfaces/geos_atmosphere/model/getvalues.yaml +++ b/src/swell/configuration/jedi/interfaces/geos_atmosphere/model/getvalues.yaml @@ -1,2 +1,3 @@ variable change: variable change name: Model2GeoVaLs + hydrometeor effective radii method: gsi diff --git a/src/swell/configuration/jedi/interfaces/geos_atmosphere/model/pseudo-model.yaml b/src/swell/configuration/jedi/interfaces/geos_atmosphere/model/pseudo-model.yaml old mode 100755 new mode 100644 diff --git a/src/swell/configuration/jedi/interfaces/geos_atmosphere/model/r2d2.yaml b/src/swell/configuration/jedi/interfaces/geos_atmosphere/model/r2d2.yaml old mode 100755 new mode 100644 diff --git a/src/swell/configuration/jedi/interfaces/geos_atmosphere/model/stage.yaml b/src/swell/configuration/jedi/interfaces/geos_atmosphere/model/stage.yaml old mode 100755 new mode 100644 diff --git a/src/swell/configuration/jedi/interfaces/geos_atmosphere/model/stage_cycle.yaml b/src/swell/configuration/jedi/interfaces/geos_atmosphere/model/stage_cycle.yaml old mode 100755 new mode 100644 diff --git a/src/swell/configuration/jedi/interfaces/geos_atmosphere/observations/amsr2_gcom-w1.yaml b/src/swell/configuration/jedi/interfaces/geos_atmosphere/observations/amsr2_gcom-w1.yaml index fab565b8..7513f174 100644 --- a/src/swell/configuration/jedi/interfaces/geos_atmosphere/observations/amsr2_gcom-w1.yaml +++ b/src/swell/configuration/jedi/interfaces/geos_atmosphere/observations/amsr2_gcom-w1.yaml @@ -23,8 +23,8 @@ obs operator: linear obs operator: Absorbers: [H2O,O3] - Clouds: [Water] - Surfaces: [Water_Temperature] + Clouds: [Water,Ice,Rain,Snow] + Surfaces: [Water_Temperature,Land_Temperature,Ice_Temperature,Snow_Temperature] obs bias: input file: '{{cycle_dir}}/amsr2_gcom-w1.{{background_time}}.satbias.nc4' diff --git a/src/swell/configuration/jedi/interfaces/geos_atmosphere/observations/gmi_gpm.yaml b/src/swell/configuration/jedi/interfaces/geos_atmosphere/observations/gmi_gpm.yaml index 928d0542..fc5a9944 100644 --- a/src/swell/configuration/jedi/interfaces/geos_atmosphere/observations/gmi_gpm.yaml +++ b/src/swell/configuration/jedi/interfaces/geos_atmosphere/observations/gmi_gpm.yaml @@ -22,8 +22,8 @@ obs operator: CoefficientPath: '{{crtm_coeff_dir}}/' linear obs operator: Absorbers: [H2O,O3] - Clouds: [Water] - Surfaces: [Water_Temperature] + Clouds: [Water,Ice,Rain,Snow] + Surfaces: [Water_Temperature,Land_Temperature,Ice_Temperature,Snow_Temperature] obs bias: input file: '{{cycle_dir}}/gmi_gpm.{{background_time}}.satbias.nc4' diff --git a/src/swell/configuration/jedi/interfaces/geos_atmosphere/observations/mhs_metop-b.yaml b/src/swell/configuration/jedi/interfaces/geos_atmosphere/observations/mhs_metop-b.yaml index bda7d6de..fb4a74c4 100644 --- a/src/swell/configuration/jedi/interfaces/geos_atmosphere/observations/mhs_metop-b.yaml +++ b/src/swell/configuration/jedi/interfaces/geos_atmosphere/observations/mhs_metop-b.yaml @@ -22,8 +22,8 @@ obs operator: CoefficientPath: '{{crtm_coeff_dir}}/' linear obs operator: Absorbers: [H2O,O3] - Clouds: [Water] - Surfaces: [Water_Temperature] + Clouds: [Water, Ice, Rain, Snow] + Surfaces: [Water_Temperature,Land_Temperature,Ice_Temperature,Snow_Temperature] obs bias: input file: '{{cycle_dir}}/mhs_metop-b.{{background_time}}.satbias.nc4' diff --git a/src/swell/configuration/jedi/interfaces/geos_atmosphere/observations/mhs_metop-c.yaml b/src/swell/configuration/jedi/interfaces/geos_atmosphere/observations/mhs_metop-c.yaml index fe148ddd..d38579cb 100644 --- a/src/swell/configuration/jedi/interfaces/geos_atmosphere/observations/mhs_metop-c.yaml +++ b/src/swell/configuration/jedi/interfaces/geos_atmosphere/observations/mhs_metop-c.yaml @@ -22,8 +22,8 @@ obs operator: CoefficientPath: '{{crtm_coeff_dir}}/' linear obs operator: Absorbers: [H2O,O3] - Clouds: [Water] - Surfaces: [Water_Temperature] + Clouds: [Water, Ice, Rain, Snow] + Surfaces: [Water_Temperature,Land_Temperature,Ice_Temperature,Snow_Temperature] obs bias: input file: '{{cycle_dir}}/mhs_metop-c.{{background_time}}.satbias.nc4' diff --git a/src/swell/configuration/jedi/interfaces/geos_atmosphere/observations/mhs_n19.yaml b/src/swell/configuration/jedi/interfaces/geos_atmosphere/observations/mhs_n19.yaml index d092fd18..f4a28ab7 100644 --- a/src/swell/configuration/jedi/interfaces/geos_atmosphere/observations/mhs_n19.yaml +++ b/src/swell/configuration/jedi/interfaces/geos_atmosphere/observations/mhs_n19.yaml @@ -22,8 +22,8 @@ obs operator: CoefficientPath: '{{crtm_coeff_dir}}/' linear obs operator: Absorbers: [H2O,O3] - Clouds: [Water] - Surfaces: [Water_Temperature] + Clouds: [Water, Ice, Rain, Snow] + Surfaces: [Water_Temperature,Land_Temperature,Ice_Temperature,Snow_Temperature] obs bias: input file: '{{cycle_dir}}/mhs_n19.{{background_time}}.satbias.nc4' diff --git a/src/swell/configuration/jedi/interfaces/geos_atmosphere/task_questions.yaml b/src/swell/configuration/jedi/interfaces/geos_atmosphere/task_questions.yaml index f36d62d3..c6f178a9 100644 --- a/src/swell/configuration/jedi/interfaces/geos_atmosphere/task_questions.yaml +++ b/src/swell/configuration/jedi/interfaces/geos_atmosphere/task_questions.yaml @@ -12,6 +12,8 @@ analysis_variables: - ps - qi - ql + - qr + - qs - o3ppmv - phis - frocean @@ -25,6 +27,8 @@ analysis_variables: - ps - qi - ql + - qr + - qs - o3ppmv - phis - frocean diff --git a/src/swell/configuration/jedi/interfaces/geos_marine/model/getvalues.yaml b/src/swell/configuration/jedi/interfaces/geos_marine/model/getvalues.yaml new file mode 100644 index 00000000..e69de29b diff --git a/src/swell/configuration/jedi/interfaces/geos_ocean/model/getvalues.yaml b/src/swell/configuration/jedi/interfaces/geos_ocean/model/getvalues.yaml new file mode 100644 index 00000000..e69de29b diff --git a/src/swell/configuration/jedi/oops/LocalEnsembleDA.yaml b/src/swell/configuration/jedi/oops/LocalEnsembleDA.yaml index 85a1163b..687edcfa 100644 --- a/src/swell/configuration/jedi/oops/LocalEnsembleDA.yaml +++ b/src/swell/configuration/jedi/oops/LocalEnsembleDA.yaml @@ -12,6 +12,9 @@ background: TASKFILLbackground_ensemble observations: + get values: + TASKFILLgetvalues + observers: SPECIALobservations diff --git a/src/swell/configuration/jedi/oops/hofx3D.yaml b/src/swell/configuration/jedi/oops/hofx3D.yaml index 2c483ca8..08dec3e7 100644 --- a/src/swell/configuration/jedi/oops/hofx3D.yaml +++ b/src/swell/configuration/jedi/oops/hofx3D.yaml @@ -10,5 +10,7 @@ state: TASKFILLbackground observations: + get values: + TASKFILLgetvalues observers: SPECIALobservations diff --git a/src/swell/configuration/jedi/oops/variational3D.yaml b/src/swell/configuration/jedi/oops/variational3D.yaml index ee57e795..f6c588a0 100644 --- a/src/swell/configuration/jedi/oops/variational3D.yaml +++ b/src/swell/configuration/jedi/oops/variational3D.yaml @@ -13,6 +13,8 @@ cost function: background error: TASKFILLbackground_error observations: + get values: + TASKFILLgetvalues observers: SPECIALobservations variational: diff --git a/src/swell/configuration/jedi/oops/variational4D.yaml b/src/swell/configuration/jedi/oops/variational4D.yaml index d72610fe..3406343c 100644 --- a/src/swell/configuration/jedi/oops/variational4D.yaml +++ b/src/swell/configuration/jedi/oops/variational4D.yaml @@ -18,6 +18,8 @@ cost function: background error: TASKFILLbackground_error observations: + get values: + TASKFILLgetvalues observers: SPECIALobservations variational: