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geoschemchem_setup
executable file
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geoschemchem_setup
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#!/bin/tcsh -f
#######################################################################
# Define Colors
# Note: For No Colors, set C1 and C2 to NONE
#######################################################################
set BLACK = `tput setaf 0`
set RED = `tput setaf 1`
set GREEN = `tput setaf 2`
set YELLOW = `tput setaf 3`
set BLUE = `tput setaf 4`
set MAGENTA = `tput setaf 5`
set CYAN = `tput setaf 6`
set WHITE = `tput setaf 7`
set RESET = `tput sgr0`
set BOLD = `tput bold`
set COLORS = `echo $BLACK $RED $GREEN $YELLOW $BLUE $MAGENTA $CYAN $WHITE $RESET`
if( -e $HOME/.GCMSETUP ) then
set GCMSETUPinfo = `cat $HOME/.GCMSETUP`
set C1 = $GCMSETUPinfo[1]
set C2 = $GCMSETUPinfo[2]
else
set C1 = $RED
set C2 = $BLUE
endif
set CN = $RESET
#######################################################################
# Build Directory Locations
#######################################################################
# Set Current Working Path to gcm_setup
# -------------------------------------
setenv ARCH `uname -s`
setenv NODE `uname -n`
if ($ARCH == Darwin) then
set PRELOAD_COMMAND = 'DYLD_INSERT_LIBRARIES'
set LD_LIBRARY_PATH_CMD = 'DYLD_LIBRARY_PATH'
# On macOS we seem to need to call mpirun directly and not use esma_mpirun
# For some reason SIP does not let the libraries be preloaded
set RUN_CMD = 'mpirun -np '
else
set PRELOAD_COMMAND = 'LD_PRELOAD'
set LD_LIBRARY_PATH_CMD = 'LD_LIBRARY_PATH'
set RUN_CMD = '$GEOSBIN/esma_mpirun -np '
endif
set BINDIR = `pwd -L`
set GEOSDEF = `dirname $BINDIR`
set ETCDIR = ${GEOSDEF}/etc
# Test if GEOSgcm.x is here which means you are in install directory
if (! -x ${BINDIR}/GEOSgcm.x) then
echo "You are trying to run $0 in the Applications/GEOSgcm_App directory"
echo "This is no longer supported. Please run from the bin/ directory"
echo "in your installation"
exit 1
endif
######################################################################
# Singularity Sandbox
#######################################################################
# This section is to determine if we are running in a Singularity
# sandbox by looking for the .singularity.d directory. If we are,
# then we set the SINGULARITY_SANDBOX environment variable to the
# path to the sandbox. If we are not, then we set it to an empty
# string.
#
# We also set the REAL_BIND_PATH and BASE_BIND_PATH environment
# variables. These are used to set the bind paths for Singularity
# runs. REAL_BIND_PATH is the physical path to the NOBACKUP directory
# and BASE_BIND_PATH is the physical path to the /gpfsm directory
# (needed for boundary conditions)
setenv KEYFILE ".singularity.d"
setenv singstat 0
setenv ORIGPATH `pwd -P`
cd $GEOSDEF
while ($singstat == 0)
if (-d $KEYFILE) then
setenv singstat 1
setenv SINGPATH `pwd -P`
endif
if ($singstat == 0) then
if ("$cwd" == "/") then
break
else
cd ..
endif
endif
end
if ($singstat == 1) then
setenv SINGULARITY_SANDBOX $SINGPATH
setenv REAL_BIND_PATH `realpath $NOBACKUP`
setenv BASE_BIND_PATH "/gpfsm"
else
setenv SINGULARITY_SANDBOX ""
setenv REAL_BIND_PATH ""
setenv BASE_BIND_PATH ""
endif
cd $ORIGPATH
#######################################################################
# Test for Command Line Flags
#######################################################################
# Set default behavior of switches
set LINKX = FALSE
set EXE_VERB = "copied"
set SINGULARITY_RUN_SITE = ""
if ($singstat == 1) then
set USING_SINGULARITY = TRUE
# If we are using Singularity, then where the image was built (say
# AWS) might not match where we run. We at least know NCCS and NAS,
# so we can use that to set the site.
if (($NODE =~ discover*) || ($NODE =~ borg*) || ($NODE =~ warp*)) then
set SINGULARITY_RUN_SITE = "NCCS"
else if (($NODE =~ pfe*) || \
($NODE =~ r[0-9]*i[0-9]*n[0-9]*) || \
($NODE =~ r[0-9]*c[0-9]*t[0-9]*n[0-9]*)) then
set SINGULARITY_RUN_SITE = "NAS"
endif
else
set USING_SINGULARITY = FALSE
endif
while ( $#argv > 0 )
set arg = $argv[1]
shift argv
switch ( $arg )
# Set our colors
case -[Cc]:
case --[Cc][Oo][Ll][Oo][Rr]:
goto SETCOLOR
# Symlink GEOSgcm.x
case --link:
set LINKX = TRUE
set EXE_VERB = "linked"
breaksw
# Avoid Symlink GEOSgcm.x
case --nolink:
set LINKX = FALSE
breaksw
# Here any string not above will trigger USAGE
case -[Hh]:
case --[Hh][Ee][Ll][Pp]:
default:
goto USAGE
endsw
end
#######################################################################
# Determine site
#######################################################################
if ($SINGULARITY_RUN_SITE == "") then
setenv SITE `awk '{print $2}' $ETCDIR/SITE.rc`
else
setenv SITE $SINGULARITY_RUN_SITE
endif
#######################################################################
# Test for Compiler and MPI Setup
#######################################################################
# Get MPI stack from CMake
set MPI_STACK = @MPI_STACK@
#######################################################################
# Enter Experiment Specific Run Parameters
#######################################################################
echo
echo "Enter the ${C1}Experiment ID${CN}:"
set EXPID = $<
DESC:
echo "Enter a 1-line ${C1}Experiment Description${CN}:"
set EXPTMP = `echo $<`
if( $#EXPTMP == 0 ) goto DESC
set EXPDSC = $EXPTMP[1]
foreach WORD ($EXPTMP)
if( $WORD != $EXPDSC ) set EXPDSC = `echo ${EXPDSC}_${WORD}`
end
GEOSTAG:
set GEOSTAG = `cat ${ETCDIR}/.AGCM_VERSION`
#######################################################################
# Test to see if you want to CLONE old experiment
#######################################################################
# Check for CLONE
# ---------------
ASKCLONE:
echo "Do you wish to ${C1}CLONE${CN} an old experiment? (Default: ${C2}NO${CN} or ${C2}FALSE${CN})"
set KLONE = $<
if( .$KLONE == . ) then
set KLONE = FALSE
else
set KLONE = `echo $KLONE | tr "[:lower:]" "[:upper:]"`
if( $KLONE == "Y" | \
$KLONE == "YES" | \
$KLONE == "T" | \
$KLONE == "TRUE" ) set KLONE = TRUE
if( $KLONE == "N" | \
$KLONE == "NO" | \
$KLONE == "F" | \
$KLONE == "FALSE" ) set KLONE = FALSE
if( $KLONE != "TRUE" & $KLONE != "FALSE" ) then
echo
echo "${C1}CLONE${CN} must be set equal to ${C2}TRUE${CN} or ${C2}FALSE${CN}!"
goto ASKCLONE
else if ( $KLONE == "TRUE" ) then
goto DOCLONE
endif
endif
#######################################################################
# Continue to enter in experiment parameters
#######################################################################
HRCODE:
echo "Enter the ${C1}Atmospheric Horizontal Resolution${CN} code:"
echo "--------------------------------------"
echo " Cubed-Sphere"
echo "--------------------------------------"
echo " ${C2}c12 -- 8 deg (${C1}750.0 km${C2}) ${CN}"
echo " ${C2}c24 -- 4 deg (${C1}375.0 km${C2}) ${CN}"
echo " ${C2}c48 -- 2 deg (${C1}187.5 km${C2}) ${CN}"
echo " ${C2}c90 -- 1 deg (${C1}100.0 km${C2}) ${CN}"
echo " ${C2}c180 -- 1/2 deg (${C1} 50.0 km${C2}) ${CN}"
echo " ${C2}c360 -- 1/4 deg (${C1} 25.0 km${C2}) ${CN} "
echo " ${C2}c720 -- 1/8 deg (${C1} 12.5 km${C2}) ${CN}"
echo " ${C2}c1440 - 1/16 deg (${C1} 6.25 km${C2}) ${CN}"
echo " ${C2}c2880 - 1/32 deg (${C1} 3.125 km${C2}) ${CN}"
echo " ${C2}c5760 - 1/64 deg (${C1} 1.5625 km${C2}) ${CN}"
echo " ${C2} CONUS Stretched Grids "
echo " ${C2}c270 -- (${C1} 16.0 -100 km${C2}) ${CN} "
echo " ${C2}c540 -- (${C1} 8.0 - 50 km${C2}) ${CN} "
echo " ${C2}c1080 - (${C1} 4.0 - 25 km${C2}) ${CN} "
echo " ${C2}c1536 - (${C1} 2.0 - 20 km${C2}) ${CN} "
echo " ${C2}c2160 - (${C1} 2.0 - 12 km${C2}) ${CN} "
echo " "
set HRCODE = `echo $<`
set HRCODE = `echo $HRCODE | tr "[:upper:]" "[:lower:]"`
if( $HRCODE != 'c12' & \
$HRCODE != 'c24' & \
$HRCODE != 'c48' & \
$HRCODE != 'c90' & \
$HRCODE != 'c180' & \
$HRCODE != 'c360' & \
$HRCODE != 'c720' & \
$HRCODE != 'c1440' & \
$HRCODE != 'c2880' & \
$HRCODE != 'c5760' & \
$HRCODE != 'c270' & \
$HRCODE != 'c540' & \
$HRCODE != 'c1080' & \
$HRCODE != 'c1536' & \
$HRCODE != 'c2160' ) goto HRCODE
set Resolution = $HRCODE
set DYCORE = FV3
set AGCM_NF = 6
set GRID_TYPE = "Cubed-Sphere"
if (`echo $Resolution[1] | cut -b1` == "c" ) then
set AGCM_IM = $Resolution[1]
else
set AGCM_IM = "c$Resolution[1]"
endif
# We make a variable here so we can easily discriminate for CS ocean support below
if ( $AGCM_IM == 'c12' || $AGCM_IM == 'c24' || $AGCM_IM == 'c48' ) then
set LOW_ATM_RES = TRUE
else
set LOW_ATM_RES = FALSE
endif
# These are superfluous for GCM, but needed for SCM (considered latlon)
set LATLON_AGCM = "#DELETE"
set CUBE_AGCM = ""
echo "Enter the Atmospheric Model ${C1}Vertical Resolution${CN}: ${C2}LM${CN} (Default: 72)"
set AGCM_LM = $<
if( .$AGCM_LM == . ) then
set AGCM_LM = 72
endif
#######################################################################
# Choose microphysics option
#######################################################################
ASKMP:
echo "Enter Choice for Atmospheric Model ${C1}Microphysics${CN}: (Default: BACM_1M)"
echo " ${C2}BACM_1M -- 3-phase 1-moment Bacmeister et al${CN}"
echo " ${C2}GFDL_1M -- 6-phase 1-moment Geophysical Fluid Dynamics Laboratory${CN}"
echo " ${C2}MGB2_2M -- 5 or 6-phase 2-moment Morrison & Gettleman${CN}"
set CLDMICRO = $<
if( .$CLDMICRO == . ) then
set CLDMICRO = "BACM_1M"
else
set CLDMICRO = `echo $CLDMICRO | tr "[:lower:]" "[:upper:]"`
if( "$CLDMICRO" != "BACM_1M" & \
"$CLDMICRO" != "GFDL_1M" & \
"$CLDMICRO" != "MGB2_2M" ) then
echo
echo "${C1}Microphysics${CN} must be one of the options below!"
goto ASKMP
endif
endif
#######################################################################
# Test to see if using hydrostatic or non-hydrostatic atmosphere
#######################################################################
ASKHYDRO:
set DEFAULT_HYDROSTATIC = TRUE
echo "Use ${C1}Hydrostatic Atmosphere${CN}? (Default: ${C2}${DEFAULT_HYDROSTATIC}${CN})"
set USE_HYDROSTATIC = $<
if( .$USE_HYDROSTATIC == . ) then
set USE_HYDROSTATIC = $DEFAULT_HYDROSTATIC
else
set USE_HYDROSTATIC = `echo $USE_HYDROSTATIC | tr "[:lower:]" "[:upper:]"`
if( $USE_HYDROSTATIC == "Y" | \
$USE_HYDROSTATIC == "YES" | \
$USE_HYDROSTATIC == "T" | \
$USE_HYDROSTATIC == "TRUE" ) set USE_HYDROSTATIC = TRUE
if( $USE_HYDROSTATIC == "N" | \
$USE_HYDROSTATIC == "NO" | \
$USE_HYDROSTATIC == "F" | \
$USE_HYDROSTATIC == "FALSE" ) set USE_HYDROSTATIC = FALSE
if( "$USE_HYDROSTATIC" != "TRUE" & "$USE_HYDROSTATIC" != "FALSE" ) then
echo
echo "Use ${C1}Hydrostatic Atmosphere${CN} must be set equal to ${C2}TRUE/YES${CN} or ${C2}FALSE/NO${CN}!"
goto ASKHYDRO
endif
endif
#######################################################################
# Test to see if you want to use ioserver
#######################################################################
ASKIOS:
if( $HRCODE == 'c180' | \
$HRCODE == 'c360' | \
$HRCODE == 'c720' | \
$HRCODE == 'c1440' | \
$HRCODE == 'c270' | \
$HRCODE == 'c540' | \
$HRCODE == 'c1080' | \
$HRCODE == 'c1536' | \
$HRCODE == 'c2160' ) then
set DEFAULT_DO_IOS = TRUE
echo "Do you wish to ${C1}IOSERVER${CN}? (Default: ${C2}YES${CN} or ${C2}TRUE${CN})"
else
set DEFAULT_DO_IOS = FALSE
echo "Do you wish to ${C1}IOSERVER${CN}? (Default: ${C2}NO${CN} or ${C2}FALSE${CN})"
endif
set DO_IOS = $<
if( .$DO_IOS == . ) then
set DO_IOS = $DEFAULT_DO_IOS
else
set DO_IOS = `echo $DO_IOS | tr "[:lower:]" "[:upper:]"`
if( $DO_IOS == "Y" | \
$DO_IOS == "YES" | \
$DO_IOS == "T" | \
$DO_IOS == "TRUE" ) set DO_IOS = TRUE
if( $DO_IOS == "N" | \
$DO_IOS == "NO" | \
$DO_IOS == "F" | \
$DO_IOS == "FALSE" ) set DO_IOS = FALSE
if( $DO_IOS != "TRUE" & $DO_IOS != "FALSE" ) then
echo
echo "${C1}IOSERVER${CN} must be set equal to ${C2}TRUE/YES${CN} or ${C2}FALSE/NO${CN}!"
goto ASKIOS
endif
endif
if ( $DO_IOS == "TRUE" ) then
set USE_IOSERVER = 1
else
set USE_IOSERVER = 0
endif
#######################################################################
# What Processor Should We Run On?
#######################################################################
ASKPROC:
if ( $SITE == 'NCCS' ) then
set BUILT_ON_SLES15 = @BUILT_ON_SLES15@
if ("$BUILT_ON_SLES15" == "TRUE") then
echo "Enter the ${C1}Processor Type${CN} you wish to run on:"
echo " ${C2}mil (Milan)${CN} (default)"
echo " "
set MODEL = `echo $<`
set MODEL = `echo $MODEL | tr "[:upper:]" "[:lower:]"`
if ( .$MODEL == .) then
set MODEL = 'mil'
endif
if( $MODEL != 'mil' ) goto ASKPROC
if ($MODEL == 'mil') then
# We save a couple processes for the kernel
set NCPUS_PER_NODE = 126
endif
else
echo "Enter the ${C1}Processor Type${CN} you wish to run on:"
echo " ${C2}sky (Skylake)${CN}"
echo " ${C2}cas (Cascade Lake) (default)${CN}"
echo " "
set MODEL = `echo $<`
set MODEL = `echo $MODEL | tr "[:upper:]" "[:lower:]"`
if ( .$MODEL == .) then
set MODEL = 'cas'
endif
if( $MODEL != 'sky' & \
$MODEL != 'cas' ) goto ASKPROC
if ($MODEL == 'sky') then
set NCPUS_PER_NODE = 40
else if ($MODEL == 'cas') then
# NCCS currently recommends that users do not run with
# 48 cores per node on SCU16 due to OS issues and
# recommends that CPU-intensive works run with 46 or less
# cores. As 45 is a multiple of 3, it's the best value
# that doesn't waste too much
#set NCPUS_PER_NODE = 48
set NCPUS_PER_NODE = 45
endif
endif
else if ( $SITE == 'NAS' ) then
echo "Enter the ${C1}Processor Type${CN} you wish to run on:"
echo " ${C2}has (Haswell)${CN}"
echo " ${C2}bro (Broadwell)${CN}"
echo " ${C2}sky (Skylake)${CN} (default)"
echo " ${C2}cas (Cascade Lake)${CN}"
echo " ${C2}rom (AMD Rome)${CN}"
echo " ${C2}mil (AMD Milan)${CN}"
echo " "
echo " NOTE Due to how FV3 is compiled by default, Sandy Bridge"
echo " and Ivy Bridge are not supported by current GEOS"
echo " "
set MODEL = `echo $<`
set MODEL = `echo $MODEL | tr "[:upper:]" "[:lower:]"`
if ( .$MODEL == .) then
set MODEL = 'sky'
endif
if( $MODEL != 'has' & \
$MODEL != 'bro' & \
$MODEL != 'sky' & \
$MODEL != 'cas' & \
$MODEL != 'rom' & \
$MODEL != 'mil' ) goto ASKPROC
# Some processors have weird names at NAS
# ---------------------------------------
if ($MODEL == sky) then
set MODEL = 'sky_ele'
else if ($MODEL == cas) then
set MODEL = 'cas_ait'
else if ($MODEL == rom) then
set MODEL = 'rom_ait'
else if ($MODEL == mil) then
set MODEL = 'mil_ait'
endif
if ($MODEL == 'has') then
set NCPUS_PER_NODE = 24
else if ($MODEL == 'bro') then
set NCPUS_PER_NODE = 28
else if ($MODEL == 'sky_ele') then
set NCPUS_PER_NODE = 40
else if ($MODEL == 'cas_ait') then
set NCPUS_PER_NODE = 40
else if ($MODEL == 'rom_ait') then
set NCPUS_PER_NODE = 128
else if ($MODEL == 'mil_ait') then
set NCPUS_PER_NODE = 128
endif
else if( $SITE == 'AWS' | $SITE == 'Azure' ) then
# Because we do not know the name of the model or the number of CPUs
# per node. We ask the user to set these variables in the script
# AWS and Azure users must set the MODEL and NCPUS_PER_NODE
set MODEL = USER_MUST_SET
set NCPUS_PER_NODE = USER_MUST_SET
# Above we need a user to set the MODEL and NCPUS_PER_NODE
# variables. Here we check that they have been set. If not,
# we ask the user to set them
# --------------------------------------------------------
if ( $MODEL == USER_MUST_SET | $NCPUS_PER_NODE == USER_MUST_SET ) then
echo "ERROR: We have detected you are on $SITE. As we do not have"
echo " official fixed node info yet, we ask you to edit $0"
echo " and set the MODEL and NCPUS_PER_NODE variables."
echo " Look for the section that says:"
echo " "
echo " # AWS and Azure users must set the MODEL and NCPUS_PER_NODE"
exit 1
endif
else
set MODEL = 'UNKNOWN'
# As we do not know how many CPUs per node, we detect the number
# of CPUs per node by looking at the number of CPUs. This is different
# on Linux and macOS
if ( $ARCH == 'Linux' ) then
set NCPUS_PER_NODE = `grep -c ^processor /proc/cpuinfo`
else if ( $ARCH == 'Darwin' ) then
set NCPUS_PER_NODE = `sysctl -n hw.ncpu`
else
echo "ERROR: Unknown architecture $ARCH"
exit 1
endif
endif
#######################################################################
# Check for COUPLED Ocean
#######################################################################
OGCM:
echo "Do you wish to run the ${C1}COUPLED${CN} Ocean/Sea-Ice Model? (Default: ${C2}NO${CN} or ${C2}FALSE${CN})"
set OGCM = $<
if( .$OGCM == . ) then
set OGCM = FALSE
else
set OGCM = `echo $OGCM | tr "[:lower:]" "[:upper:]"`
if( $OGCM == "Y" | \
$OGCM == "YES" | \
$OGCM == "T" | \
$OGCM == "TRUE" ) set OGCM = TRUE
if( $OGCM == "N" | \
$OGCM == "NO" | \
$OGCM == "F" | \
$OGCM == "FALSE" ) set OGCM = FALSE
if( $OGCM != TRUE & $OGCM != FALSE ) then
echo
echo "${C1}COUPLED${CN} must be set equal to TRUE or FALSE!"
goto OGCM
else
echo
endif
endif
set MPT_SHEPHERD = ""
if( $OGCM == TRUE ) then
set COUPLED = ""
set DATAOCEAN = "#DELETE"
set OCEAN_NAME = ""
set OCEAN_PRELOAD = ""
set SEAICE_NAME = ""
set SEAICE_PRELOAD = ""
# Ocean Model
# -----------
OCNMODEL:
echo "Choose an ${C1}Ocean Model${CN}: (Default: ${C2}MOM6${CN})"
echo " ${C2}MOM5${CN}"
echo " ${C2}MOM6${CN}"
echo " ${C2}MIT${CN}"
set OCNMODEL = $<
if ( .$OCNMODEL == . ) then
set OCNMODEL = "MOM6"
else
set OCNMODEL = `echo $OCNMODEL | tr "[:lower:]" "[:upper:]"`
if ( "$OCNMODEL" != "MOM5" & "$OCNMODEL" != "MOM6" & "$OCNMODEL" != "MIT") then
echo
echo "${C1}Ocean Model${CN} must be either MOM5, MOM6 or MIT!"
goto OCNMODEL
else
echo
endif
endif
# NOTE: We use a CMake variable here because the shared library
# suffix is different on Linux and macOS. This is set by configure_file()
if ( "$OCNMODEL" == "MOM5" ) then
set OCEAN_NAME="MOM"
set OGRIDTYP = "M5TP"
set OCEAN_PRELOAD = 'env @PRELOAD_COMMAND=$GEOSDIR/lib/libmom@CMAKE_SHARED_LIBRARY_SUFFIX@'
set MOM5=""
set MOM6 = "#DELETE"
set DEFAULT_HISTORY_TEMPLATE="HISTORY.AOGCM-MOM5.rc.tmpl"
set mom5_warning=">>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>\nYou (user) have chosen to set up a coupled model experiment with MOM5.\nBe aware that such a set up is _known_ to have problems. See following for more details.\nhttps://github.com/GEOS-ESM/MOM5/issues/19\nIf your intent is to help _fix_ above issue, your help is much appreciated. Thank you and good luck!\nOtherwise, until this above issue is _fixed_ you are on your own with above choice.\n<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<"
echo "\033[31;5m"${mom5_warning}"\033[0m"
set MIT = "#DELETE"
else if ( "$OCNMODEL" == "MOM6" ) then
set OCEAN_NAME="MOM6"
set OGRIDTYP = "M6TP"
set OCEAN_PRELOAD = 'env @PRELOAD_COMMAND=\$GEOSDIR/lib/libmom6@CMAKE_SHARED_LIBRARY_SUFFIX@'
set MOM6=""
set MOM5 = "#DELETE"
set DEFAULT_HISTORY_TEMPLATE="HISTORY.AOGCM.rc.tmpl"
set MIT = "#DELETE"
else if ( "$OCNMODEL" == "MIT" ) then
set OCEAN_NAME="MIT"
set OGCM_GRID_TYPE = llc
set OGRIDTYP = "MITLLC"
set MIT = ""
set DEFAULT_HISTORY_TEMPLATE="HISTORY.AOGCM_MITgcm.rc.tmpl"
set MOM5 = "#DELETE"
set MOM6 = "#DELETE"
endif
# Coupled Ocean Resolution
# ------------------------
CORSLV:
if( "$OCNMODEL" == "MIT" ) then
if ( $AGCM_IM != "c90" ) then
echo "You MUST select c90 atmospheric resolution for MIT ocean!"
exit 1
endif
set OGRIDTYP = "MITLLC"
set OGCM_JM = 15
set OGCM_IM = `expr $OGCM_JM \* 360`
else if ( $OCEAN_NAME == "MOM" ) then
set Resolution = `echo 360 200`
echo "Enter the Ocean Lat/Lon ${C1}Horizontal Resolution${CN}: ${C2}IM JM${CN} (Default:" $Resolution")"
set Resolution = `echo $<`
set num = $#Resolution
if( $num == 2 ) then
set OGCM_IM = $Resolution[1]
set OGCM_JM = $Resolution[2]
else
set Resolution = `echo 360 200`
if( $num == 0 ) then
set OGCM_IM = $Resolution[1]
set OGCM_JM = $Resolution[2]
else
goto CORSLV
endif
endif
else if ( "$OCNMODEL" == "MOM6" ) then
# For MOM6 we currently have only 3 allowed ocean resolutions based on the
# atmospheric resolution. The allowed are:
#
# Atm Res Atm NXxNY Atm IMxJM Ocean NXxNY Ocean IMxJM Ocean LM
# ------- --------- --------- ----------- ----------- --------
# c12 1x6 12x72 3x2 72x36 50
# c90 5x36 90x540 90x2 540x458 50
# c180 30x36 180x1080 36x30 1440x1080 75
#
# See https://github.com/GEOS-ESM/GEOSgcm/wiki/Coupled-model-configurations-(GEOS-MOM6)
if ( $AGCM_IM == "c12" ) then
set OGCM_NX = 3
set OGCM_NY = 2
set OGCM_IM = 72
set OGCM_JM = 36
set OGCM_LM = 50
else if ( $AGCM_IM == "c90" ) then
set OGCM_NX = 90
set OGCM_NY = 2
set OGCM_IM = 540
set OGCM_JM = 458
set OGCM_LM = 50
else if ( $AGCM_IM == "c180" ) then
set OGCM_NX = 36
set OGCM_NY = 30
set OGCM_IM = 1440
set OGCM_JM = 1080
set OGCM_LM = 75
else
echo
echo "ERROR: MOM6 is currently only supported for c12, c90, and c180 atmospheric resolutions"
exit 1
endif
endif
set IMO = ${OGCM_IM}
if( $IMO < 10 ) then
set IMO = 000$IMO
else if($IMO < 100) then
set IMO = 00$IMO
else if($IMO < 1000) then
set IMO = 0$IMO
endif
set JMO = ${OGCM_JM}
if( $JMO < 10 ) then
set JMO = 000$JMO
else if($JMO < 100) then
set JMO = 00$JMO
else if($JMO < 1000) then
set JMO = 0$JMO
endif
set OCEAN_RES = ${OGRIDTYP}${IMO}x${JMO}
set OCEAN_TAG = Reynolds
set SSTNAME = "#DELETE"
set SSTFILE = "#DELETE"
set ICEFILE = "#DELETE"
set KPARFILE = SEAWIFS_KPAR_mon_clim.${OGCM_IM}x${OGCM_JM}
set OSTIA = "#DELETE"
set OCEANOUT = "#DELETE"
# Seaice Model
# -----------
SEAICEMODEL:
echo "Choose a ${C1}Seaice Model${CN}: (Default: ${C2}CICE4${CN})"
echo " ${C2}CICE4${CN}"
echo " ${C2}CICE6${CN}"
set SEAICEMODEL = $<
if ( .$SEAICEMODEL == . ) then
set SEAICEMODEL = "CICE4"
else
set SEAICEMODEL = `echo $SEAICEMODEL | tr "[:lower:]" "[:upper:]"`
if ( $SEAICEMODEL != "CICE4" & $SEAICEMODEL != "CICE6" ) then
echo
echo "${C1}Seaice Model${CN} must be either CICE4 or CICE6!"
goto SEAICEMODEL
else
echo
endif
endif
# NOTE: We use a CMake variable here because the shared library
# suffix is different on Linux and macOS. This is set by configure_file()
if ( $SEAICEMODEL == "CICE4" ) then
set SEAICE_NAME="CICE4"
set SEAICE_PRELOAD = '$GEOSDIR/lib/libCICE4@CMAKE_SHARED_LIBRARY_SUFFIX@'
set CICE4=""
set CICE6 = "#DELETE"
set HIST_CICE4 = ""
else if ( $SEAICEMODEL == "CICE6" ) then
set SEAICE_NAME="CICE6"
set SEAICE_PRELOAD = '$GEOSDIR/lib/libcice6@CMAKE_SHARED_LIBRARY_SUFFIX@'
set CICE6=""
set CICE4 = "#DELETE"
set HIST_CICE4 = "#DELETE"
endif
if ( $SEAICEMODEL == "CICE6" & $OCNMODEL != "MOM6" ) then
echo
echo "${C1}Ocean Model${CN} must be MOM6 when Seaice Model is CICE6!"
goto OCNMODEL
endif
# combine seaice preload with ocean preload
set OCEAN_PRELOAD = `echo ${OCEAN_PRELOAD}`:`echo ${SEAICE_PRELOAD}`
# We only ask this if not MOM6
if ( "$OCNMODEL" != "MOM6" ) then
echo "Enter the Ocean Model ${C1}Vertical Resolution${CN}: ${C2}LM${CN} (Default: 50)"
set OGCM_LM = $<
if( .$OGCM_LM == . ) then
set OGCM_LM = 50
endif
set OGCM_NX = 36
set OGCM_NY = 10
endif
@ OGCM_NPROCS = $OGCM_NX * $OGCM_NY
if ( "$OCNMODEL" != "MIT" ) then
set OGCM_GRID_TYPE = Tripolar
endif
set LATLON_OGCM = ""
set CUBE_OGCM = "#DELETE"
set DATAOCEAN = "#DELETE"
set OGCM_NF = 1
if( "$OCNMODEL" == "MIT" ) then
set OGCM_NX = 360
set OGCM_NY = 1
set OGCM_GRIDSPEC = mit.ascii
endif
else
# OGCM = FALSE (Data Ocean Resolution)
# ------------------------------------
DORSLV:
echo "Enter the ${C1}Data_Ocean Horizontal Resolution ${CN}code: ${C2}o1${CN} (1 -deg, 360x180 Reynolds) Default"
echo " ${C2}o2${CN} (1/4-deg, 1440x720 MERRA-2)"
echo " ${C2}o3${CN} (1/8-deg, 2880x1440 OSTIA)"
echo " ${C2}CS${CN} (Cubed-Sphere OSTIA)"
set HRCODE = `echo $<`
if( .$HRCODE == . ) set HRCODE = o1
set HRCODE = `echo $HRCODE | tr "[:upper:]" "[:lower:]"`
if( $HRCODE != 'o1' & \
$HRCODE != 'o2' & \
$HRCODE != 'o3' & \
$HRCODE != 'cs' ) goto DORSLV
if( $HRCODE == 'o1' ) then
set Resolution = `echo 360 180`
set OGCM_IM = $Resolution[1]
set OGCM_JM = $Resolution[2]
set OGCM_GRID_TYPE = LatLon
set OGCM_NF = 1
set OCEAN_TAG = Reynolds
set SSTNAME = SST
set OCEANOUT = "360x180"
set SSTFILE = dataoceanfile_MERRA_sst_1971-current.${OGCM_IM}x${OGCM_JM}.LE
set ICEFILE = dataoceanfile_MERRA_fraci_1971-current.${OGCM_IM}x${OGCM_JM}.LE
set KPARFILE = SEAWIFS_KPAR_mon_clim.${OGCM_IM}x${OGCM_JM}
set OGRIDTYP = "DE"
set LATLON_OGCM = ""
set CUBE_OGCM = "#DELETE"
set OSTIA = "#DELETE"
set DATAOCEAN = ""
endif
if( $HRCODE == 'o2' ) then
set Resolution = `echo 1440 720`
set OGCM_IM = $Resolution[1]
set OGCM_JM = $Resolution[2]
set OGCM_GRID_TYPE = LatLon
set OGCM_NF = 1
set OCEAN_TAG = MERRA-2
set SSTNAME = MERRA2
set OCEANOUT = "1440x720"
set SSTFILE = dataoceanfile_MERRA2_SST.${OGCM_IM}x${OGCM_JM}.\${YEAR}.data
set ICEFILE = dataoceanfile_MERRA2_ICE.${OGCM_IM}x${OGCM_JM}.\${YEAR}.data
set KPARFILE = SEAWIFS_KPAR_mon_clim.${OGCM_IM}x${OGCM_JM}
set OGRIDTYP = "DE"
set LATLON_OGCM = ""
set CUBE_OGCM = "#DELETE"
set OSTIA = ""
set DATAOCEAN = ""
endif
if( $HRCODE == 'o3' ) then
set Resolution = `echo 2880 1440`
set OGCM_IM = $Resolution[1]
set OGCM_JM = $Resolution[2]
set OGCM_GRID_TYPE = LatLon
set OGCM_NF = 1
set LATLON_OGCM = ""
set CUBE_OGCM = "#DELETE"
set OCEAN_TAG = Ostia
set SSTNAME = OSTIA_REYNOLDS
set OCEANOUT = "2880x1440"
set SSTFILE = dataoceanfile_OSTIA_REYNOLDS_SST.${OGCM_IM}x${OGCM_JM}.\${YEAR}.data
set ICEFILE = dataoceanfile_OSTIA_REYNOLDS_ICE.${OGCM_IM}x${OGCM_JM}.\${YEAR}.data
set KPARFILE = SEAWIFS_KPAR_mon_clim.${OGCM_IM}x${OGCM_JM}
set OGRIDTYP = "DE"
set OSTIA = ""
set DATAOCEAN = ""
endif
if( $HRCODE == 'cs' ) then
if( $LOW_ATM_RES == 'FALSE') then
set OGCM_IM = `echo $AGCM_IM | cut -b2-`
set OGCM_JM = `expr $OGCM_IM \* 6`
set Resolution = `echo $OGCM_IM $OGCM_JM`
set OGCM_IM = $Resolution[1]
set OGCM_JM = $Resolution[2]
set OGCM_GRID_TYPE = Cubed-Sphere
set OGCM_NF = 6
set LATLON_OGCM = "#DELETE"
set CUBE_OGCM = ""
set DATAOCEAN = "#DELETE"
set OCEAN_TAG = Ostia
set SSTNAME = OSTIA_REYNOLDS
set OCEANOUT = "CS"
set SSTFILE = dataoceanfile_OSTIA_REYNOLDS_SST.${OGCM_IM}x${OGCM_JM}.\${YEAR}.data
set ICEFILE = dataoceanfile_OSTIA_REYNOLDS_ICE.${OGCM_IM}x${OGCM_JM}.\${YEAR}.data
set KPARFILE = SEAWIFS_KPAR_mon_clim.${OGCM_IM}x${OGCM_JM}
set OGRIDTYP = "CF"
set OSTIA = ""
else
echo "Error: Cubed-Sphere Ocean with ${AGCM_IM} not currently supported. Must be c90 or higher"
exit 7
endif
endif
set IMO = ${OGCM_IM}
set JMO = ${OGCM_JM}
if( $IMO < 10 ) then
set IMO = 000$IMO
else if($IMO < 100) then
set IMO = 00$IMO
else if($IMO < 1000) then
set IMO = 0$IMO
endif
if( $JMO < 10 ) then
set JMO = 000$JMO
else if($JMO < 100) then
set JMO = 00$JMO
else if($JMO < 1000) then
set JMO = 0$JMO
endif
if( $HRCODE == 'cs' ) then
set OCEAN_RES = CF${IMO}x6C
else
set OCEAN_RES = DE${IMO}xPE${JMO}
endif
set DATAOCEAN = ""
set OCEAN_NAME = ""
set OCEAN_PRELOAD = ""
set OGCM_LM = 34
set COUPLED = "#DELETE"
set MOM5 = "#DELETE"
set MOM6 = "#DELETE"
set CICE4 = "#DELETE"
set CICE6 = "#DELETE"
set HIST_CICE4 = "#DELETE"
set OCNMODEL = "Data Ocean (${HRCODE})"
set DEFAULT_HISTORY_TEMPLATE="HISTORY_GEOSCHEMCHEM.rc.tmpl"
set MIT = "#DELETE"
set OGCM_NX = ""
set OGCM_NY = ""
set OGCM_NPROCS = ""
endif
# Set DEFAULT SHMEM Parameter
# ---------------------------
set USE_SHMEM = 0
# Set IAU-Forcing and Bias Correction OFF
# ---------------------------------------
set FORCEDAS = "#"
set FORCEGCM = "#"
# Set Default Readers and Writers
# -------------------------------
set NUM_READERS = 1
set NUM_WRITERS = 1
# Set default CONVPAR_OPTION to GF
# (set to NONE at C2880 and C5760)
# --------------------------------
set CONVPAR_OPTION = GF
# Default Run Parameters
# ----------------------
if( $AGCM_IM == "c12" ) then
set DT = 1800
set SOLAR_DT = 3600
set IRRAD_DT = 3600
set OCEAN_DT = $IRRAD_DT
set LONG_DT = $DT
set GEOSCHEMCHEM_DT = `expr $DT \* 2`
set AGCM_IM = 12
set AGCM_JM = `expr $AGCM_IM \* 6`
# C12 MOM6 should be 1x6 to match the default 3x2 ocean layout
if ( "$OCNMODEL" == "MOM6") then
set NX = 1
else
set NX = 2
endif
set NY = `expr $NX \* 6`
set HYDROSTATIC = $USE_HYDROSTATIC
set HIST_IM = `expr $AGCM_IM \* 4`
set HIST_JM = `expr $AGCM_IM \* 2 + 1`
set JOB_SGMT = 00000015
set NUM_SGMT = 20
set ATMOS_RES = CF0012x6C