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sessionInfo_scRNA_preprocessing.txt
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sessionInfo_scRNA_preprocessing.txt
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R version 4.2.2 (2022-10-31 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 22631)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.utf8 LC_CTYPE=English_United States.utf8 LC_MONETARY=English_United States.utf8 LC_NUMERIC=C
[5] LC_TIME=English_United States.utf8
attached base packages:
[1] tools stats graphics grDevices utils datasets methods base
other attached packages:
[1] glmGamPoi_1.10.2 lubridate_1.9.2 forcats_1.0.0 stringr_1.5.0 dplyr_1.1.2 purrr_1.0.1 readr_2.1.4 tidyr_1.3.0
[9] tibble_3.2.1 tidyverse_2.0.0 ggplot2_3.4.2 Azimuth_0.4.6 shinyBS_0.61.1 patchwork_1.2.0 sctransform_0.3.5 SeuratObject_4.1.3
[17] Seurat_4.1.1
loaded via a namespace (and not attached):
[1] plyr_1.8.8 igraph_1.3.5 lazyeval_0.2.2 sp_1.6-0 shinydashboard_0.7.2
[6] splines_4.2.2 listenv_0.9.0 scattermore_0.8 GenomeInfoDb_1.34.9 digest_0.6.31
[11] htmltools_0.5.4 fansi_1.0.4 magrittr_2.0.3 tensor_1.5 googlesheets4_1.1.0
[16] cluster_2.1.4 ROCR_1.0-11 tzdb_0.3.0 globals_0.16.2 matrixStats_0.63.0
[21] timechange_0.2.0 spatstat.sparse_3.0-1 colorspace_2.1-0 rappdirs_0.3.3 ggrepel_0.9.3
[26] xfun_0.39 RCurl_1.98-1.9 crayon_1.5.2 jsonlite_1.8.4 progressr_0.13.0
[31] spatstat.data_3.0-1 survival_3.5-0 zoo_1.8-11 glue_1.6.2 polyclip_1.10-4
[36] gtable_0.3.3 gargle_1.4.0 zlibbioc_1.44.0 XVector_0.38.0 leiden_0.4.3
[41] DelayedArray_0.24.0 future.apply_1.10.0 BiocGenerics_0.44.0 abind_1.4-5 scales_1.2.1
[46] DBI_1.1.3 spatstat.random_3.1-4 miniUI_0.1.1.1 Rcpp_1.0.10 viridisLite_0.4.1
[51] xtable_1.8-4 reticulate_1.28 spatstat.core_2.4-4 bit_4.0.5 stats4_4.2.2
[56] DT_0.27 htmlwidgets_1.6.2 httr_1.4.6 RColorBrewer_1.1-3 ellipsis_0.3.2
[61] ica_1.0-3 pkgconfig_2.0.3 uwot_0.1.11 deldir_1.0-6 utf8_1.2.2
[66] tidyselect_1.2.0 rlang_1.1.0 reshape2_1.4.4 later_1.3.0 munsell_0.5.0
[71] cellranger_1.1.0 ggprism_1.0.4 cli_3.6.0 generics_0.1.3 ggridges_0.5.4
[76] evaluate_0.20 fastmap_1.1.0 yaml_2.3.7 goftest_1.2-3 knitr_1.42
[81] bit64_4.0.5 fs_1.6.0 fitdistrplus_1.1-11 RANN_2.6.1 SeuratData_0.2.2
[86] pbapply_1.7-0 future_1.32.0 nlme_3.1-161 mime_0.12 hdf5r_1.3.8
[91] compiler_4.2.2 rstudioapi_0.14 plotly_4.10.1 png_0.1-8 spatstat.utils_3.0-2
[96] stringi_1.7.12 lattice_0.20-45 Matrix_1.5-3 psych_2.3.6 SeuratDisk_0.0.0.9020
[101] ggsci_2.9 shinyjs_2.1.0 vctrs_0.6.2 pillar_1.9.0 lifecycle_1.0.3
[106] spatstat.geom_3.1-0 lmtest_0.9-40 ComplexUpset_1.3.3 RcppAnnoy_0.0.20 bitops_1.0-7
[111] data.table_1.14.6 cowplot_1.1.1 irlba_2.3.5.1 GenomicRanges_1.50.2 httpuv_1.6.9
[116] R6_2.5.1 promises_1.2.0.1 KernSmooth_2.23-20 gridExtra_2.3 writexl_1.4.2
[121] IRanges_2.32.0 parallelly_1.35.0 codetools_0.2-18 MASS_7.3-58.1 SummarizedExperiment_1.28.0
[126] withr_2.5.0 mnormt_2.1.1 presto_1.0.0 EnhancedVolcano_1.16.0 GenomeInfoDbData_1.2.9
[131] S4Vectors_0.36.1 mgcv_1.8-41 parallel_4.2.2 hms_1.1.3 grid_4.2.2
[136] rpart_4.1.19 rmarkdown_2.21 MatrixGenerics_1.10.0 googledrive_2.1.0 Rtsne_0.16
[141] Biobase_2.58.0 shiny_1.7.4