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binaryIO.cpp
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binaryIO.cpp
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void readBinHeader( string filename,
int* t_offset,
int* m0, int* n0, int* l0,
int* m1, int* n1, int* l1,
int* m2, int* n2, int* l2,
int* m3, int* n3, int* l3
) {
int mode = -1;
FILE *file;
char filename_char[100];
strcpy(filename_char, filename.c_str());
file = fopen(filename_char , "rb");
/* read header */
fread(&mode, sizeof(int), 1, file);
fread(t_offset, sizeof(int), 1, file);
cout << "mode: " << mode << endl;
cout << "time step: " << *t_offset << endl;
/* read matrix shapes */
fread(m0, sizeof(int), 1, file);
fread(n0, sizeof(int), 1, file);
fread(l0, sizeof(int), 1, file);
fread(m1, sizeof(int), 1, file);
fread(n1, sizeof(int), 1, file);
fread(l1, sizeof(int), 1, file);
fread(m2, sizeof(int), 1, file);
fread(n2, sizeof(int), 1, file);
fread(l2, sizeof(int), 1, file);
fread(m3, sizeof(int), 1, file);
fread(n3, sizeof(int), 1, file);
fread(l3, sizeof(int), 1, file);
fclose(file);
}
void readBin( string filename, const int n_i,
double *C, double *Ez, double *Er, double *Eq,
double *Jz, double *Jr, double *Jq,
int* m0, int* n0, int* l0,
int* m1, int* n1, int* l1,
int* m2, int* n2, int* l2,
int* m3, int* n3, int* l3,
double *z, double *d_m,
double *dqq, double *dx, double *dt, double *R,
double *a, double *b, double *c, double *km,
double *bulk, double *amo_z, double *amo_r, double *slp,
double *n_display, double *t_after ) {
int mode = -1;
int t_offset = -1;
FILE *file;
char filename_char[100];
strcpy(filename_char, filename.c_str());
file = fopen(filename_char , "rb");
cout << "opened " << filename_char << endl;
/* read header */
fread(&mode, sizeof(int), 1, file);
fread(&t_offset, sizeof(int), 1, file);
/* read matrix shapes */
fread(m0, sizeof(int), 1, file);
fread(n0, sizeof(int), 1, file);
fread(l0, sizeof(int), 1, file);
fread(m1, sizeof(int), 1, file);
fread(n1, sizeof(int), 1, file);
fread(l1, sizeof(int), 1, file);
fread(m2, sizeof(int), 1, file);
fread(n2, sizeof(int), 1, file);
fread(l2, sizeof(int), 1, file);
fread(m3, sizeof(int), 1, file);
fread(n3, sizeof(int), 1, file);
fread(l3, sizeof(int), 1, file);
/* read C profile */
int size0 = 0;
size0 = *m0 * *n0 * *l0 * n_i;
// cout << "C has " << size0 << " elements." << endl;
fread(C, sizeof(double), size0, file);
/* read E profiles */
int size1 = 0;
size1 = *m1 * *n1 * *l1;
cout << "Ez has " << size1 << " elements." << endl;
fread(Ez, sizeof(double), size1, file);
int size2 = 0;
size2 = *m2 * *n2 * *l2;
cout << "Er has " << size2 << " elements." << endl;
fread(Er, sizeof(double), size2, file);
int size3 = 0;
size3 = *m3 * *n3 * *l3;
cout << "Eq has " << size3 << " elements." << endl;
fread(Eq, sizeof(double), size3, file);
/* read J profiles */
size1 = *m1 * *n1 * *l1 * n_i;
cout << "Jz has " << size1 << " elements." << endl;
fread(Jz, sizeof(double), size1, file);
size2 = *m2 * *n2 * *l2 * n_i;
cout << "Jr has " << size2 << " elements." << endl;
fread(Jr, sizeof(double), size2, file);
size3 = *m3 * *n3 * *l3 * n_i;
cout << "Jq has " << size3 << " elements." << endl;
fread(Jq, sizeof(double), size3, file);
/* read constants */
fread(z, sizeof(double), n_i, file);
fread(d_m, sizeof(double), n_i, file);
fread(dqq, sizeof(double), 1, file);
fread(dx, sizeof(double), 1, file);
fread(dt, sizeof(double), 1, file);
/* read R */
size0 = *m0 * *n0 * (*l0+1);
cout << "R has " << size0 << " elements." << endl;
fread(R, sizeof(double), size0, file);
/* read coefficients */
fread(a, sizeof(double), 1, file);
fread(b, sizeof(double), 1, file);
fread(c, sizeof(double), 1, file);
fread(km, sizeof(double), 1, file);
/* read bulk */
size0 = *n0 * *l0 * n_i;
cout << "bulk has " << size0 << " elements." << endl;
fread(bulk, sizeof(double), size0, file);
/* read misc. */
fread(amo_z, sizeof(double), 1, file);
cout << "amo_z = " << *amo_z << endl;
fread(amo_r, sizeof(double), 1, file);
cout << "amo_r = " << *amo_r << endl;
fread(slp, sizeof(double), 3, file);
cout << "slp = " << slp[0] << ", " << slp[1] << ", " << slp[2] << endl;
fread(n_display, sizeof(double), 1, file);
cout << "n_display = " << *n_display << endl;
fread(t_after, sizeof(double), 1, file);
cout << "t_after = " << *t_after << endl;
fclose(file);
}
void writeBin( string filename, const int n_i, int t_offset,
double *C, double *Ez, double *Er, double *Eq,
double *Jz, double *Jr, double *Jq,
int* m0, int* n0, int* l0,
int* m1, int* n1, int* l1,
int* m2, int* n2, int* l2,
int* m3, int* n3, int* l3
) {
int mode = 0;
int t = -1;
FILE *file;
char filename_char[100];
strcpy(filename_char, filename.c_str());
file = fopen(filename_char , "wb");
/* write header */
fwrite(&mode, sizeof(int), 1, file);
fwrite(&t_offset, sizeof(int), 1, file);
/* write matrix shapes */
fwrite(m0, sizeof(int), 1, file);
fwrite(n0, sizeof(int), 1, file);
fwrite(l0, sizeof(int), 1, file);
fwrite(m1, sizeof(int), 1, file);
fwrite(n1, sizeof(int), 1, file);
fwrite(l1, sizeof(int), 1, file);
fwrite(m2, sizeof(int), 1, file);
fwrite(n2, sizeof(int), 1, file);
fwrite(l2, sizeof(int), 1, file);
fwrite(m3, sizeof(int), 1, file);
fwrite(n3, sizeof(int), 1, file);
fwrite(l3, sizeof(int), 1, file);
/* write C profile */
int size0 = 0;
size0 = *m0 * *n0 * *l0 * n_i;
// cout << "C has " << size0 << " elements." << endl;
fwrite(C, sizeof(double), size0, file);
/* write E profiles */
int size1 = 0;
size1 = *m1 * *n1 * *l1;
// cout << "Ez has " << size1 << " elements." << endl;
fwrite(Ez, sizeof(double), size1, file);
int size2 = 0;
size2 = *m2 * *n2 * *l2;
// cout << "Er has " << size2 << " elements." << endl;
fwrite(Er, sizeof(double), size2, file);
int size3 = 0;
size3 = *m3 * *n3 * *l3;
// cout << "Eq has " << size3 << " elements." << endl;
fwrite(Eq, sizeof(double), size3, file);
/* write J profiles */
size1 = *m1 * *n1 * *l1 * n_i;
// cout << "Jz has " << size1 << " elements." << endl;
fwrite(Jz, sizeof(double), size1, file);
size2 = *m2 * *n2 * *l2 * n_i;
// cout << "Jr has " << size2 << " elements." << endl;
fwrite(Jr, sizeof(double), size2, file);
size3 = *m3 * *n3 * *l3 * n_i;
// cout << "Jq has " << size3 << " elements." << endl;
fwrite(Jq, sizeof(double), size3, file);
fclose(file);
}