v0.8.0

Microbiome v0.8.0

Diff since v0.7.2

Closed issues:

• Ensure round-tripping with DataFrames (#62)
• Bulk addition of metadata (#63)
• Bulk extraction of metadata (#64)
• Add set! method for adding metadata to community profile (#65)
• Add taxfilter/taxfilter! functions for community profiles (#67)
• Add function to partition gene function profile into stratified / unstratified (#68)
• Broken link to biojulia contribution guidelines (#69)
• Change add_metadata! for single samples to set! and insert! (#75)
• Add docs for Dictionaries methods (#76)
• master vs. main (#90)
• taxon ref link (#91)
• broken ref link (#92)
• grammar typo (#93)
• Documenter broken - version incompatibility (#95)

Merged pull requests:

• add custom printing for abundance tables (#70) (@kescobo)
• add constructor with dense matrix (#71) (@kescobo)
• Method for bulk addition of metadata to a Community Profile (#72) (@kescobo)
• change contributing link (#73) (@anikaluo)
• Add dictionary methods to CommunityProfiles (#74) (@kescobo)
• Add cladefilter (#77) (@kescobo)
• Add generic filter for CommunityProfiles (#79) (@kescobo)
• Adding docstrings to CP methods (#82) (@annelle-abatoni)
• Manuscript (#83) (@kescobo)
• GeneFunction equality (#85) (@kescobo)
• add species string for gene families table output (#86) (@kescobo)
• Indexing (#87) (@kescobo)
• Docs and tutorials (#88) (@kescobo)
• Microbiome typos/edits (#89) (@anikaluo)
• Issue jubilee (#94) (@kescobo)
• use docs deploy action (#96) (@kescobo)
• Feature strings (#97) (@kescobo)
• fix branch in gha-docs (#98) (@kescobo)
• Manuscript (#100) (@annelle-abatoni)
• Figures (#101) (@kescobo)
• EcoJulia transfer (#102) (@kescobo)

v0.7.2

Microbiome v0.7.2

Diff since v0.7.1

Closed issues:

• Add prevalence and abundance filters to AbundanceTable (#32)

Merged pull requests:

• Add function to join community profiles (#58) (@kescobo)
• change ci to julia 1 (#59) (@kescobo)
• Add prevalence_filter (#61) (@kescobo)
• Metadata for CommunityProfiles (#66) (@kescobo)

v0.7.1

Microbiome v0.7.1

Diff since v0.7.0

Merged pull requests:

• Distance metrics (#57) (@pknight24)

v0.7.0

Microbiome v0.7.0

Diff since v0.6.5

Merged pull requests:

• Tables interface (#54) (@kescobo)
• v0.7.0 release, version, news, etc (#56) (@kescobo)

v0.6.5

Microbiome v0.6.5

Diff since v0.6.3

Merged pull requests:

• CompatHelper: bump compat for "StatsBase" to "0.33" (#45) (@github-actions[bot])
• CompatHelper: bump compat for "DataFrames" to "0.21" (#46) (@github-actions[bot])
• Fix Docs Build (#47) (@kescobo)
• Updates (#48) (@kescobo)
• update compat (#51) (@kescobo)

v0.6.3

Microbiome v0.6.3

Diff since v0.6.2

Merged pull requests:

• Update SpatialEcology dependency (#44) (@kescobo)

v0.6.2

Microbiome v0.6.2

Diff since v0.6.1

Merged pull requests:

• CompatHelper: bump compat for "SpatialEcology" to "0.8" (#41) (@github-actions[bot])
• CompatHelper: bump compat for "SpatialEcology" to "0.9" (#42) (@github-actions[bot])
• Bump version for compat (#43) (@kescobo)

v0.6.1

Microbiome v0.6.1

Diff since v0.6.0

Closed issues:

• Register v0.6 (#39)

Merged pull requests:

• v0.6 (#38) (@kescobo)
• No Manifest file (#40) (@benjward)

v0.6.0

Microbiome v0.6.0

Diff since v0.5.1

Closed issues:

• Register 0.5.1 (#35)

Merged pull requests:

• Several fixes (#37) (@kescobo)

New DataFrames syntax etc.

v0.5.1

Add upper bounds on Dependencies