Local R machine:
> sessionInfo()
R version 3.3.2 (2016-10-31)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X El Capitan 10.11.6
locale:
[1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8
attached base packages:
[1] grid stats graphics grDevices utils datasets methods base
other attached packages:
[1] glmmTMB_0.2.0 Formula_1.2-2 survival_2.40-1 lattice_0.20-34
[5] lme4_1.1-12 Matrix_1.2-12 dplyr_0.5.0 purrr_0.2.2
[9] readr_1.0.0 tidyr_0.6.1 tibble_1.2 ggplot2_2.2.1
[13] tidyverse_1.1.0 data.table_1.10.4-3
loaded via a namespace (and not attached):
[1] TMB_1.7.11 reshape2_1.4.2 splines_3.3.2 haven_1.0.0
[5] colorspace_1.3-2 base64enc_0.1-3 nloptr_1.0.4 foreign_0.8-67
[9] DBI_0.5-1 RColorBrewer_1.1-2 modelr_0.1.0 readxl_0.1.1
[13] plyr_1.8.4 stringr_1.1.0 munsell_0.4.3 gtable_0.2.0
[17] rvest_0.3.2 psych_1.6.12 labeling_0.3 latticeExtra_0.6-28
[21] parallel_3.3.2 broom_0.4.1 Rcpp_0.12.9 acepack_1.4.1
[25] scales_0.4.1 jsonlite_1.2 gridExtra_2.2.1 mnormt_1.5-5
[29] hms_0.3 digest_0.6.11 stringi_1.1.2 tools_3.3.2
[33] magrittr_1.5 lazyeval_0.2.0 cluster_2.0.5 MASS_7.3-45
[37] xml2_1.1.1 lubridate_1.6.0 assertthat_0.1 minqa_1.2.4
[41] httr_1.2.1 R6_2.2.0 rpart_4.1-10 nnet_7.3-12
[45] nlme_3.1-130
Remote Machine (GNU Awk 3.1.7) R session info:
> sessionInfo()
R version 3.2.2 (2015-08-14)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS release 6.9 (Final)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
Personally loaded onto local repo on remote machine:
popoolation_1.2.2
matrixStats_0.53.0.tar.gz
poolSeq_0.3.2.tar.gz
Versions of different functions:
bowtie2 <- 2.2.2
reference Genome <- dmel-all-chromosome-r5.57.fasta.gz
bwa <- 0.7.8
picard-tools <- 1.131
Gowinda <- 1.12
poppolation2 <- version1201
samtools <- 1.3.1
novoalign <- 3.07
java <- version "1.8.0_121"
trimmomatic <- 0.33
adapter <- TruSeq3-PE.fa:2:30:10