From 493c11ec387b3ccee693d046e76386fdcfdf6c31 Mon Sep 17 00:00:00 2001
From: Vitor Shen <17490173+shenvitor@users.noreply.github.com>
Date: Fri, 10 May 2024 19:02:18 +0200
Subject: [PATCH] new workflow

---
 .github/workflows/deploy.yml |  46 ++++++++++++
 pixi.lock                    | 135 +++++++++++++++++++++++++++++++++++
 pixi.toml                    |   1 +
 3 files changed, 182 insertions(+)
 create mode 100644 .github/workflows/deploy.yml

diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml
new file mode 100644
index 0000000..1b37e69
--- /dev/null
+++ b/.github/workflows/deploy.yml
@@ -0,0 +1,46 @@
+# This file was created automatically with `myst init --gh-pages` 🪄 💚
+
+name: MyST GitHub Pages Deploy
+on:
+  push:
+    # Runs on pushes targeting the default branch
+    branches: [main]
+env:
+  # `BASE_URL` determines the website is served from, including CSS & JS assets
+  # You may need to change this to `BASE_URL: ''`
+  BASE_URL: /${{ github.event.repository.name }}
+
+# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
+permissions:
+  contents: read
+  pages: write
+  id-token: write
+# Allow only one concurrent deployment, skipping runs queued between the run in-progress and latest queued.
+# However, do NOT cancel in-progress runs as we want to allow these production deployments to complete.
+concurrency:
+  group: "pages"
+  cancel-in-progress: false
+jobs:
+  deploy:
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - name: Setup Pages
+        uses: actions/configure-pages@v3
+      - uses: actions/setup-node@v4
+        with:
+          node-version: 18.x
+      - name: Install MyST Markdown
+        run: npm install -g mystmd
+      - name: Build HTML Assets
+        run: myst build --html
+      - name: Upload artifact
+        uses: actions/upload-pages-artifact@v1
+        with:
+          path: "./_build/html"
+      - name: Deploy to GitHub Pages
+        id: deployment
+        uses: actions/deploy-pages@v2
diff --git a/pixi.lock b/pixi.lock
index 35bedf0..5d44ea6 100644
--- a/pixi.lock
+++ b/pixi.lock
@@ -28,6 +28,7 @@ environments:
       - conda: https://conda.anaconda.org/conda-forge/linux-64/cffi-1.16.0-py312hf06ca03_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/charset-normalizer-3.3.2-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/click-8.1.7-unix_pyh707e725_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/colorama-0.4.6-pyhd8ed1ab_0.tar.bz2
       - conda: https://conda.anaconda.org/conda-forge/noarch/comm-0.2.2-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/debugpy-1.8.1-py312h30efb56_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/decorator-5.1.1-pyhd8ed1ab_0.tar.bz2
@@ -36,6 +37,8 @@ environments:
       - conda: https://conda.anaconda.org/conda-forge/noarch/exceptiongroup-1.2.0-pyhd8ed1ab_2.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/executing-2.0.1-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/fqdn-1.5.1-pyhd8ed1ab_0.tar.bz2
+      - conda: https://conda.anaconda.org/conda-forge/noarch/gitdb-4.0.11-pyhd8ed1ab_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/gitpython-3.1.43-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/h11-0.14.0-pyhd8ed1ab_0.tar.bz2
       - conda: https://conda.anaconda.org/conda-forge/noarch/h2-4.1.0-pyhd8ed1ab_0.tar.bz2
       - conda: https://conda.anaconda.org/conda-forge/noarch/hpack-4.0.0-pyh9f0ad1d_0.tar.bz2
@@ -60,12 +63,14 @@ environments:
       - conda: https://conda.anaconda.org/conda-forge/noarch/jsonschema-specifications-2023.12.1-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/jsonschema-with-format-nongpl-4.22.0-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/jupyter-lsp-2.2.5-pyhd8ed1ab_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/jupyter-server-mathjax-0.2.6-pyh5bfe37b_1.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/jupyter_client-8.6.1-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/jupyter_core-5.7.2-py312h7900ff3_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/jupyter_events-0.10.0-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/jupyter_server-2.14.0-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/jupyter_server_terminals-0.5.3-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/jupyterlab-4.2.0-pyhd8ed1ab_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/jupyterlab-git-0.50.0-pyhd8ed1ab_1.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/jupyterlab_pygments-0.3.0-pyhd8ed1ab_1.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/jupyterlab_server-2.27.1-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/keyutils-1.6.1-h166bdaf_0.tar.bz2
@@ -101,6 +106,7 @@ environments:
       - conda: https://conda.anaconda.org/conda-forge/noarch/mypy_extensions-1.0.0-pyha770c72_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/nbclient-0.10.0-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/nbconvert-core-7.16.4-pyhd8ed1ab_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/nbdime-4.0.1-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/nbformat-5.10.4-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h59595ed_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/nest-asyncio-1.6.0-pyhd8ed1ab_0.conda
@@ -145,6 +151,7 @@ environments:
       - conda: https://conda.anaconda.org/conda-forge/noarch/send2trash-1.8.3-pyh0d859eb_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/setuptools-69.5.1-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/six-1.16.0-pyh6c4a22f_0.tar.bz2
+      - conda: https://conda.anaconda.org/conda-forge/noarch/smmap-5.0.0-pyhd8ed1ab_0.tar.bz2
       - conda: https://conda.anaconda.org/conda-forge/noarch/sniffio-1.3.1-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/soupsieve-2.5-pyhd8ed1ab_1.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/stack_data-0.6.2-pyhd8ed1ab_0.conda
@@ -550,6 +557,21 @@ packages:
   license_family: BSD
   size: 84437
   timestamp: 1692311973840
+- kind: conda
+  name: colorama
+  version: 0.4.6
+  build: pyhd8ed1ab_0
+  subdir: noarch
+  noarch: python
+  url: https://conda.anaconda.org/conda-forge/noarch/colorama-0.4.6-pyhd8ed1ab_0.tar.bz2
+  sha256: 2c1b2e9755ce3102bca8d69e8f26e4f087ece73f50418186aee7c74bef8e1698
+  md5: 3faab06a954c2a04039983f2c4a50d99
+  depends:
+  - python >=3.7
+  license: BSD-3-Clause
+  license_family: BSD
+  size: 25170
+  timestamp: 1666700778190
 - kind: conda
   name: comm
   version: 0.2.2
@@ -674,6 +696,39 @@ packages:
   license_family: MOZILLA
   size: 14395
   timestamp: 1638810388635
+- kind: conda
+  name: gitdb
+  version: 4.0.11
+  build: pyhd8ed1ab_0
+  subdir: noarch
+  noarch: python
+  url: https://conda.anaconda.org/conda-forge/noarch/gitdb-4.0.11-pyhd8ed1ab_0.conda
+  sha256: 52ab2798be31b8f509eeec458712f447ced4f96ecb672c6c9a42778f47e07b1b
+  md5: 623b19f616f2ca0c261441067e18ae40
+  depends:
+  - python >=3.7
+  - smmap >=3.0.1,<6
+  license: BSD-3-Clause
+  license_family: BSD
+  size: 52872
+  timestamp: 1697791718749
+- kind: conda
+  name: gitpython
+  version: 3.1.43
+  build: pyhd8ed1ab_0
+  subdir: noarch
+  noarch: python
+  url: https://conda.anaconda.org/conda-forge/noarch/gitpython-3.1.43-pyhd8ed1ab_0.conda
+  sha256: cbb2802641a009ce9bcc2a047e817fd8816f9c842036a42f4730398d8e4cda2a
+  md5: 0b2154c1818111e17381b1df5b4b0176
+  depends:
+  - gitdb >=4.0.1,<5
+  - python >=3.7
+  - typing_extensions >=3.7.4.3
+  license: BSD-3-Clause
+  license_family: BSD
+  size: 156827
+  timestamp: 1711991122366
 - kind: conda
   name: h11
   version: 0.14.0
@@ -1119,6 +1174,23 @@ packages:
   license_family: BSD
   size: 55539
   timestamp: 1712707521811
+- kind: conda
+  name: jupyter-server-mathjax
+  version: 0.2.6
+  build: pyh5bfe37b_1
+  build_number: 1
+  subdir: noarch
+  noarch: python
+  url: https://conda.anaconda.org/conda-forge/noarch/jupyter-server-mathjax-0.2.6-pyh5bfe37b_1.conda
+  sha256: 46f6c3b76d9f03e8eb31e1c178083efb7de94447b8b14d378493073666a791a1
+  md5: 11ca195fc8a16770661a387bcce27c36
+  depends:
+  - jupyter_server >=1.1,<3
+  - python >=3.7
+  license: BSD-3-Clause
+  license_family: BSD
+  size: 2046225
+  timestamp: 1672324687778
 - kind: conda
   name: jupyter_client
   version: 8.6.1
@@ -1258,6 +1330,30 @@ packages:
   license_family: BSD
   size: 7874048
   timestamp: 1715012272179
+- kind: conda
+  name: jupyterlab-git
+  version: 0.50.0
+  build: pyhd8ed1ab_1
+  build_number: 1
+  subdir: noarch
+  noarch: python
+  url: https://conda.anaconda.org/conda-forge/noarch/jupyterlab-git-0.50.0-pyhd8ed1ab_1.conda
+  sha256: 690f493904a89b550d636e1e727fffec240ae90f28cf275ef21a0f45ea034e66
+  md5: 5020cacc18e3d5f62a81513f26ac2cac
+  depends:
+  - jupyter_server >=2.0,<3.0
+  - nbdime >=4.0,<5.0
+  - nbformat
+  - packaging
+  - pexpect
+  - python >=3.6,<4.0
+  - traitlets >=5.0,<6.0
+  constrains:
+  - jupyterlab >=4,<5
+  license: BSD-3-Clause
+  license_family: BSD
+  size: 902783
+  timestamp: 1707314502152
 - kind: conda
   name: jupyterlab_pygments
   version: 0.3.0
@@ -1867,6 +1963,30 @@ packages:
   license_family: BSD
   size: 189004
   timestamp: 1714477286178
+- kind: conda
+  name: nbdime
+  version: 4.0.1
+  build: pyhd8ed1ab_0
+  subdir: noarch
+  noarch: python
+  url: https://conda.anaconda.org/conda-forge/noarch/nbdime-4.0.1-pyhd8ed1ab_0.conda
+  sha256: de2dc2281e914d7483b9affdb435fac292b4fd1f736bfe27c3f90b8c23f9244d
+  md5: dd76d44a144499f8ff3254fd20cdb7a2
+  depends:
+  - colorama
+  - gitpython !=2.1.4,!=2.1.5,!=2.1.6
+  - jinja2 >=2.9
+  - jupyter-server-mathjax >=0.2.2
+  - jupyter_server
+  - nbformat
+  - pygments
+  - python >=3.6
+  - requests
+  - tornado
+  license: BSD-3-Clause
+  license_family: BSD
+  size: 4420024
+  timestamp: 1700575801912
 - kind: conda
   name: nbformat
   version: 5.10.4
@@ -2594,6 +2714,21 @@ packages:
   license_family: MIT
   size: 14259
   timestamp: 1620240338595
+- kind: conda
+  name: smmap
+  version: 5.0.0
+  build: pyhd8ed1ab_0
+  subdir: noarch
+  noarch: python
+  url: https://conda.anaconda.org/conda-forge/noarch/smmap-5.0.0-pyhd8ed1ab_0.tar.bz2
+  sha256: 23011cb3e064525bdb8787c75126a2e78d2344a72cd6773922006d1da1f2af16
+  md5: 62f26a3d1387acee31322208f0cfa3e0
+  depends:
+  - python >=3.5
+  license: BSD-3-Clause
+  license_family: BSD
+  size: 22483
+  timestamp: 1634310465482
 - kind: conda
   name: sniffio
   version: 1.3.1
diff --git a/pixi.toml b/pixi.toml
index 9cfa5b1..fe3f73b 100644
--- a/pixi.toml
+++ b/pixi.toml
@@ -17,3 +17,4 @@ jax = ">=0.4.26,<0.5"
 numpy = ">=1.26.4,<1.27"
 black = ">=24.4.2,<24.5"
 isort = ">=5.13.2,<5.14"
+jupyterlab-git = ">=0.50.0,<0.51"