From 24a270ad686eb363fc72c417f6adfa9a73184a4e Mon Sep 17 00:00:00 2001
From: Gab-D-G
Date: Thu, 21 Sep 2023 14:29:45 -0400
Subject: [PATCH 1/3] switching to version 0.5.1
---
rabies/__version__.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/rabies/__version__.py b/rabies/__version__.py
index ad08bdc..e244663 100644
--- a/rabies/__version__.py
+++ b/rabies/__version__.py
@@ -3,6 +3,6 @@
# 88YbdP88 8P 88""" dP__Yb Yb 88"Yb dP__Yb Yb "88 88""
# 88 YY 88 dP 88 dP""""Yb YboodP 88 Yb dP""""Yb YboodP 888888
-VERSION = (0, 5, 0)
+VERSION = (0, 5, 1)
__version__ = '.'.join(map(str, VERSION))
From 179cb52153ca11c30ed42196a7299a85adaa5859 Mon Sep 17 00:00:00 2001
From: Gab-D-G
Date: Thu, 21 Sep 2023 16:16:55 -0400
Subject: [PATCH 2/3] Updated for new test dataset and combined additional
resources into running the software
---
docs/additional.md | 5 ----
docs/running_the_software.md | 58 +++++++++++++++++++++---------------
2 files changed, 34 insertions(+), 29 deletions(-)
delete mode 100644 docs/additional.md
diff --git a/docs/additional.md b/docs/additional.md
deleted file mode 100644
index 7c573a1..0000000
--- a/docs/additional.md
+++ /dev/null
@@ -1,5 +0,0 @@
-# Additional Resources
-
-* A workshop providing a complete software overview was recorded and posted online: https://www.youtube.com/watch?v=LZohKlUgycc&t=2766s&ab_channel=DouglasResearchCentre
-* Conversion from Bruker raw to Nifti formats can be handled with [BrkRaw](https://brkraw.github.io/) (consult [associated documentation](https://github.com/CoBrALab/documentation/wiki/bruker2nifti-conversion) from the CoBrALab)
-* CoBrALab recommendations for using compute canada: https://github.com/CoBrALab/documentation/wiki/Running-RABIES-on-niagara
diff --git a/docs/running_the_software.md b/docs/running_the_software.md
index 54c6bd4..0880f98 100644
--- a/docs/running_the_software.md
+++ b/docs/running_the_software.md
@@ -12,7 +12,7 @@ Mandatory BIDS specifications are:
* `run-{run #}` is necessary for functional images if there are multiple scans per session
### Directory structure for an example dataset
-* Our [example dataset](http://doi.org/10.5281/zenodo.3937697) has the following BIDS structure:
+* Our [example dataset](http://doi.org/10.5281/zenodo.8349029) has the following BIDS structure:
@@ -20,7 +20,7 @@ Mandatory BIDS specifications are:
-
-
- test_dataset
- ├── sub-MFC067
- │ └── ses-1
- │ ├── anat
- │ │ └── sub-MFC067_ses-1_acq-FLASH_T1w.nii.gz
- │ └── func
- │ └── sub-MFC067_ses-1_task-rest_acq-EPI_run-1_bold.nii.gz
- └── sub-MFC068
- └── ses-1
- ├── anat
- │ └── sub-MFC068_ses-1_acq-FLASH_T1w.nii.gz
- └── func
- └── sub-MFC068_ses-1_task-rest_acq-EPI_run-1_bold.nii.gz
-
-
-
-
-8 directories, 4 files
-
-
-
+ https://zenodo.org/record/8349029/preview/test_dataset.zip
+ ├── sub-PHG001
+ │ └── ses-3
+ │ ├── anat
+ │ │ ├── sub-PHG001_ses-3_acq-RARE_T2w.json
+ │ │ └── sub-PHG001_ses-3_acq-RARE_T2w.nii.gz
+ │ └── func
+ │ ├── sub-PHG001_ses-3_task-rest_acq-EPI_run-1_bold.json
+ │ └── sub-PHG001_ses-3_task-rest_acq-EPI_run-1_bold.nii.gz
+ └── sub-PHG002
+ └── ses-3
+ ├── anat
+ │ ├── sub-PHG002_ses-3_acq-RARE_T2w.json
+ │ └── sub-PHG002_ses-3_acq-RARE_T2w.nii.gz
+ └── func
+ ├── sub-PHG002_ses-3_task-rest_acq-EPI_run-1_bold.json
+ └── sub-PHG002_ses-3_task-rest_acq-EPI_run-1_bold.nii.gz
+
+
+
+
+8 directories, 8 files
+
+
+