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question on graph compaction #5

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kevyin opened this issue Feb 5, 2021 · 1 comment
Open

question on graph compaction #5

kevyin opened this issue Feb 5, 2021 · 1 comment
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@kevyin
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kevyin commented Feb 5, 2021 •
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Hi thank you for cuttlefish,

I have an output from cuttlefish at k=31

The unitigs don't seem to be maximal, there are multiple unitigs in a row shouldn't they be joined merged?

cuttlefish_k31

I hope I didnt do something wrong
Thanks in advance
@jamshed
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jamshed commented Feb 5, 2021

Hi @kevyin, thank you for using cuttlefish! We'll need some more information to look into this. Would it be possible for you to provide the reference data that you had used in this experiment, or any small enough sample where you're observing such a scenario? Besides, please provide the commands that you used here. Also, what tool have you used for the visualization?

@jamshed jamshed added the question Further information is requested label Jul 22, 2022
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@kevyin @jamshed