Skip to content

Latest commit

 

History

History
230 lines (180 loc) · 8.3 KB

CHANGELOG.md

File metadata and controls

230 lines (180 loc) · 8.3 KB
Raw

tiffslide changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

Unreleased - ...

[2.4.0] - 2024-02-14

Added

  • tiffslide: support for getting the icc profile if available

2.3.1 - 2023-11-30

Fixed

  • tiffslide: fix philips tiff mpp_x, mpp_y

2.3.0 - 2023-11-30

Added

  • tiffslide: added support for philips tiff metadata parsing

2.2.0 - 2023-06-10

Changed

  • tiffslide: drop support for Python 3.7

Fixed

  • tiffslide._zarr: speedup tile access by preventing double decode #72

2.1.2 - 2023-04-04

Fixed

  • tiffslide: add bounds when parsing leica metadata #68

2.1.1 - 2023-03-13

Fixed

  • tiffslide: Provide fallback support for broken images with non-ascii ImageDescription tags

2.1.0 - 2023-02-13

Fixed

  • tiffslide: fix possible inconsistency in downsampled scaling between axis

2.0.1 - 2023-02-09

Fixed

  • tiffslide: fixed missing occurrences of downsamples change

2.0.0 - 2023-02-09

Changed

  • tiffslide: the downsamples are now calculated identical to openslide (breaking)

Fixed

  • tiffslide: fix repr when backed by ReferenceFileSystem
  • tiffslide: prevent deprecation warning with non-rgb images
  • prevent incompatibility issues with fsspec on py3.7
  • support newer pillow

1.10.1 - 2022-11-09

Fixed

  • tiffslide: support .getitems() fetching via ReferenceFileSystem

1.10.0 - 2022-10-07

Added

  • tiffslide: parse additional hamamatsu specific tags

Fixed

  • tiffslide: fix bug in TiffSlide.get_best_level_for_downsample

1.9.0 - 2022-09-18

Added

  • tiffslide: support single-channel 16bit svs/tiff files

1.8.1 - 2022-09-13

Fixed

  • tiffslide._zarr: unwrap the compatibility shim correctly on py37

1.8.0 - 2022-08-31

Added

  • tiffslide: allow limiting worker threads via env TIFFSLIDE_NUM_DECODE_THREADS

1.7.0 - 2022-08-23

Added

  • tiffslide._zarr: added experimental support for getting chunk sizes

1.6.0 - 2022-08-15

Changed

  • tiffslide: remove old svs metadata parsing compatibility patch

1.5.0 - 2022-07-25

Fixed

  • tiffslide: prevent deprecation warning with ANTIALIAS for pillow>=9.1.0

Changed

  • tiffslide: don't require backports.cached_property on python3.7 anymore

1.4.0 - 2022-07-15

Added

  • tiffslide._kerchunk: added experimental support for kerchunk serialization

1.3.0 - 2022-06-30

Fixed

  • compatibility: fixed scn compositing (#36)

Added

  • TiffSlide().zarr_group property to replace .ts_zarr_grp in a future version

1.2.1 - 2022-06-16

Fixed

  • correct padding on nonzero levels (#38)

1.2.0 - 2022-04-03

Added

  • compatibility: add fallback support for non-tiff images via tiffslide.open_slide (#19)
  • make region padding configurable

Fixed

  • compatibility: support padding regions if out-of-bounds region requested (#27)
  • prevent numpy scalar overflows when using np.int32 coords in read_region (#29)

1.1.1 - 2022-03-31

Changes

  • change conda environment back to have conda devenv features in a compatibility way

Fixed

  • fixes py37 zarr/tifffile version compatibility issue for installs via pypi

1.1.0 - 2022-03-22

Added

  • support Leica SCN format
  • support using local images for tests via TIFFSLIDE_TEST_IMAGES env var

Changes

  • tiffslide: refactor .properties to simplify adding new formats
  • tiffslide.deepzoom: allow JPEG2000 LOSSY

1.0.1 - 2022-02-24

Fixed

  • tiffslide.deepzoom: support ycbc and rgb svs with and without jpeg tables

1.0.0 - 2022-01-31

Added

  • docs: add stable version installation instructions

Changed

  • tiffslide: remove deprecated private method (breaking)
  • tiffslide: remove obsolete internal state after using cached_property
  • docs: update and improve the README

Fixed

  • tiffslide: complete typing overload for read_region
  • tiffslide: change order of checks in _prepare_tifffile

0.3.0 - 2022-01-31

Added

  • support opening fsspec urlpaths and openfiles directly

Fixed

  • fix multithreaded access of uninitialized TiffSlide instance
  • tiffslide.deepzoom only use rgb colorfix if needed

0.2.2 - 2021-11-17

Fixed

  • fix black bar artifacts on computed intermediate levels in tiffslide.deepzoom
  • warnings regarding aliasing now report at the correct stack level

0.2.1 - 2021-09-28

Fixed

  • fix [XY]Resolution are rational numbers

0.2.0 - 2021-08-29

Added

  • add use_embedded kwarg to TiffSlide.get_thumbnail
  • add as_array kwarg to TiffSlide.get_region

Change

  • deprecate internal _read_region_as_array

0.1.1 - 2021-08-25

Fixed

  • fixed typing with newer versions of numpy
  • fixed missing mpp for generic tiffs that provide [XY]Resolution and ResolutionUnit
  • allow providing OpenFile objects to tiffslide.deepzoom

0.1.0 - 2021-07-06

Fixed

  • allow passing file objects
  • fix svs metadata handling (fixed upstream in tifffile)
  • fix single-level svs handling

Added

  • tests via pytest
  • type annotations and mypy type checking
  • TiffSlide.read_region_array method for reading np.ndarray

Changed

  • removed TiffSlide.ts_filename attribute

0.0.1 - 2021-03-18

Added

  • initial release of tiffslide and