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Fiji wrappers StarDist and Cellpose #13

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romainGuiet opened this issue Apr 1, 2024 · 0 comments
Open

Fiji wrappers StarDist and Cellpose #13

romainGuiet opened this issue Apr 1, 2024 · 0 comments

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@romainGuiet
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To enable the wrappers you need to :

-for Cellpose wrapper : specify where the environment is, using Plugin>BIOP>Cellpose setup... and specify /opt/conda/envs/cellpose/ . The default models are already installed, so you can use the plugin !

-for StarDist wrapper : specify where the environment is, using Plugin>BIOP>StarDist3D setup... and specify /opt/conda/envs/stardist/ . You will need a StarDist3D model. As far as I know, there is NO official StarDist3D model, but we made one available on zenodo.

A script is made to enable this preferences but so far it's not taken into account... need further investigation 😑

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